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sergeeeysergeeey/Claude-cod-top-2026/skills/extensions/backward-traceability/SKILL.md

backward-traceability

Skill9 starsChanged 6 months agoMITView on GitHub

Make every number in the final PDF traceable to the exact code line that produced it. Uses \hypertarget/\hyperlink LaTeX commands and \num{formula} evaluated at compile time. Use for reproducibility and data integrity verification.

3 other projects use a version of this, 3 of them edited.

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The file

We split this skill into the rules it gives an agent

8 rules. 3 are common, 0 are distinctive, and 5 are very specific to this project.

  • 3

    Common

    Most of the 3 edited versions we read keep these.

  • 0

    Distinctive

    This author's own choices. Worth a look.

  • 5

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Very specific:

    Use \hyperlink to create clickable references in the paper:

    line 53
  2. Very specific:

    Create an appendix with the full code listing, with \hypertarget anchors at relevant lines:

    line 69
  3. Very specific:

    Every number in the paper text must have a corresponding \hypertarget in the code

    line 80
  4. Very specific:

    Every \num{} formula must evaluate correctly

    line 81
  5. Common:

    Every numeric result in the paper MUST trace to code output

    line 94
  6. Common:

    Never manually type numbers — always reference tagged outputs

    line 95
  7. Very specific:

    Use \num{} for any derived/computed values

    line 96
  8. Common:

    Verify all hyperlinks resolve correctly after compilation

    line 98

“Common” is measured: kept by at least 6 in 10 of the 3 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Backward Traceability

Make every number in the final PDF hyperlink back to the exact code line that produced it.

Input

  • $0 — Paper project directory containing code and LaTeX files

References

  • Traceability patterns and LaTeX commands: ~/.claude/skills/backward-traceability/references/traceability-patterns.md

Scripts

Scan hypertarget/hyperlink references

python ~/.claude/skills/backward-traceability/scripts/ref_numeric_values.py \
  --scan paper/main.tex --output report.json

Reports: all hypertargets, hyperlinks, orphan references, unreferenced numeric values.

Verify cross-reference integrity

python ~/.claude/skills/backward-traceability/scripts/ref_numeric_values.py \
  --verify paper/main.tex --code-output results.txt

Cross-checks values between paper text and code output. Reports mismatches.

Workflow

Step 1: Tag Code Outputs

For every numeric value produced by experiment code, add hypertarget tags:

# In experiment code output:
print(f"\\hypertarget{{R1a}}{{45.3}}")  # Mean accuracy
print(f"\\hypertarget{{R1b}}{{2.1}}")   # Std deviation

Label format: {prefix}{line_number}{letter} where letter = a, b, c... for multiple values on same line.

Step 2: Reference in Paper Text

Use \hyperlink to create clickable references in the paper:

Our method achieves \hyperlink{R1a}{45.3}\% accuracy
($\pm$\hyperlink{R1b}{2.1}).

Step 3: Use \num for Computed Values

For values derived from other values, use \num{} for compile-time evaluation:

% \num{formula, "explanation"} → evaluated at compile time
The improvement is \num{45.3 - 38.7, "accuracy gain"}\%.

Step 4: Generate Appendix Code Listing

Create an appendix with the full code listing, with \hypertarget anchors at relevant lines:

\section*{Appendix: Code Listing}
\begin{lstlisting}[escapechar=@]
@\hypertarget{code1}{}@result = model.evaluate(test_data)
@\hypertarget{code2}{}@accuracy = result['accuracy']
\end{lstlisting}

Step 5: Verify Traceability

  • Every number in the paper text must have a corresponding \hypertarget in the code
  • Every \num{} formula must evaluate correctly
  • Click-test: every hyperlink in the PDF must jump to the correct code line

LaTeX Setup

Required packages:

\usepackage{hyperref}
\usepackage{listings}

Rules

  • Every numeric result in the paper MUST trace to code output
  • Never manually type numbers — always reference tagged outputs
  • Use \num{} for any derived/computed values
  • Code listing in appendix must match actual executed code
  • Verify all hyperlinks resolve correctly after compilation

Related Skills

  • Upstream: experiment-code, data-analysis
  • Downstream: paper-compilation
  • See also: paper-assembly

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