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zjunlpzjunlp/Mechanist/skills/research-review/SKILL.md

research-review

Skill75 starsChanged 4 months agoMITView on GitHub

Get a deep critical review of research from an external LLM reviewer via llm-chat MCP. Use when user says "review my research", "help me review", "get external review", or wants critical feedback on research ideas, papers, or experimental results.

  • Reads credentials

17 other projects use a version of this, 10 of them edited.

Adopted by

Most recently taken up by

Used with

Projects with it also use resubmit-pipeline, experiment-bridge and 7 more.

Other files people use alongside this one.

Files found in the same public projects as a version of this one, more often than they turn up anywhere else. Each project counts once, large collections count for less, and this file's own repository is left out.
  • raja21068Skill

    resubmit-pipeline

    Workflow 5: orchestrate a text-only resubmit of a polished paper to a different venue under hard constraints (no new experiments, no bib edits, no framework changes, never overwrite prior submissions). Phase 0 physical isolation, Phase 0.5 health + anonymity check, Phase 1 audit (proof / claim / citation), Phase 2 microedits via auto-loop with edit-whitelist + citation-audit --soft-only, Phase 3 kill-argument adversarial gate, Phase 4 final compile + Overleaf push via /overleaf-sync. Use when user says \"resubmit pipeline\", \"重投流程\", \"port paper to <new venue>\", \"resubmit to <venue>\", \"tighten paper for resubmission\", or has a rejected/withdrawn paper to move to a different top venue under tight time budget.

    Also in 5 projects that use this

  • raja21068Skill

    experiment-bridge

    Workflow 1.5: Bridge between idea discovery and auto review. Reads EXPERIMENT_PLAN.md, implements experiment code, deploys to GPU, collects initial results. Use when user says \"实现实验\", \"implement experiments\", \"bridge\", \"从计划到跑实验\", \"deploy the plan\", or has an experiment plan ready to execute.

    Also in 4 projects that use this

  • rongaredeSkill

    semantic-scholar

    使用 Semantic Scholar API 检索和验证学术论文。支持并发多关键词搜索、批量 ID/DOI 查询、引用分析、批量补全摘要、统一 Markdown 导出。覆盖 2.14 亿+ 学术论文,无需 API Key 即可使用。触发词:论文检索、论文验证、Semantic Scholar、S2 搜索、查论文、补全摘要、导出MD

    Also in 6 projects that use this

  • +6 more from raja21068

The file

We split this skill into the rules it gives an agent

8 rules. 4 are common, 1 is distinctive, and 3 are very specific to this project.

  • 4

    Common

    Most of the 15 edited versions we read keep these.

  • 1

    Distinctive

    This author's own choices. Worth a look.

  • 3

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Very specific:

    Hard-fail rule: If LLM_MODEL is empty after this resolution (none of the three sources provides it), the skill MUST abort with:

    line 47
  2. Very specific:

    Do not guess a default. Do not fall back to a model name read from task.md or any other project file.

    line 50
  3. Common:

    Before calling the external reviewer, compile a comprehensive briefing:

    line 62
  4. Common:

    Read project narrative documents (e.g., STORY.md, README.md, paper drafts)

    line 63
  5. Common:

    Read any memory/notes files for key findings and experiment history

    line 64
  6. Common:

    Update project memory/notes with key review conclusions.

    line 112
  7. Distinctive:

    Always ask the external reviewer for strict, high-rigor feedback

    line 116
  8. Very specific:

    After each mcp__llm-chat__chat reviewer call, save the trace following shared-references/review-tracing.md.

    line 143

“Common” is measured: kept by at least 6 in 10 of the 15 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Research Review via llm-chat MCP

Get a multi-round critical review of research work from an external LLM.

Constants

  • REVIEWER_BACKEND = llm-chat — External LLM reviewer via llm-chat MCP (model defers to LLM_MODEL env). Always ask the external reviewer for strict, high-rigor feedback.
  • Override with — reviewer: oracle-pro via Oracle MCP.

Reviewer LLM Configuration (mandatory, read first)

This skill calls an external LLM reviewer. Never hardcode a model name and never read the reviewer model from task.md / project READMEs / source comments. Project-level files may list available API keys for unrelated purposes (e.g., LLM-as-judge inside experiment code); those are not the reviewer config.

Resolve LLM_MODEL, LLM_BASE_URL, LLM_API_KEY strictly in this priority order before any reviewer call:

  1. Project MCP config — ${PROJECT_ROOT}/.mcp.json, field mcpServers["llm-chat"].env.{LLM_MODEL,LLM_BASE_URL,LLM_API_KEY}.
  2. User MCP config — ~/.claude/settings.json, same field.
  3. Shell environment — $LLM_MODEL, $LLM_BASE_URL, $LLM_API_KEY.

Pre-flight check (run before Step 2, mandatory)

LLM_MODEL_SRC=""
if [ -f .mcp.json ] && jq -e '.mcpServers["llm-chat"].env.LLM_MODEL' .mcp.json >/dev/null 2>&1 ; then
  export LLM_MODEL=$(jq -r '.mcpServers["llm-chat"].env.LLM_MODEL' .mcp.json)
  export LLM_BASE_URL=$(jq -r '.mcpServers["llm-chat"].env.LLM_BASE_URL' .mcp.json)
  export LLM_API_KEY=$(jq -r '.mcpServers["llm-chat"].env.LLM_API_KEY' .mcp.json)
  LLM_MODEL_SRC="project .mcp.json"
elif [ -f ~/.claude/settings.json ] && jq -e '.mcpServers["llm-chat"].env.LLM_MODEL' ~/.claude/settings.json >/dev/null 2>&1 ; then
  export LLM_MODEL=$(jq -r '.mcpServers["llm-chat"].env.LLM_MODEL' ~/.claude/settings.json)
  export LLM_BASE_URL=$(jq -r '.mcpServers["llm-chat"].env.LLM_BASE_URL' ~/.claude/settings.json)
  export LLM_API_KEY=$(jq -r '.mcpServers["llm-chat"].env.LLM_API_KEY' ~/.claude/settings.json)
  LLM_MODEL_SRC="user ~/.claude/settings.json"
elif [ -n "$LLM_MODEL" ] && [ -n "$LLM_BASE_URL" ] && [ -n "$LLM_API_KEY" ] ; then
  LLM_MODEL_SRC="shell env"
fi
echo "[reviewer-config] LLM_MODEL=$LLM_MODEL  LLM_BASE_URL=$LLM_BASE_URL  source=$LLM_MODEL_SRC"

Hard-fail rule: If LLM_MODEL is empty after this resolution (none of the three sources provides it), the skill MUST abort with:

"Reviewer model not configured. Add mcpServers.llm-chat.env.{LLM_MODEL,LLM_BASE_URL,LLM_API_KEY} to .mcp.json (project) or ~/.claude/settings.json (user)."

Do not guess a default. Do not fall back to a model name read from task.md or any other project file.

Context: $ARGUMENTS

Prerequisites

  • llm-chat MCP Server configured in ~/.claude/settings.json with LLM_API_KEY, LLM_BASE_URL, and LLM_MODEL.
  • This gives Claude Code access to the mcp__llm-chat__chat tool.

Workflow

Step 1: Gather Research Context

Before calling the external reviewer, compile a comprehensive briefing:

  1. Read project narrative documents (e.g., STORY.md, README.md, paper drafts)
  2. Read any memory/notes files for key findings and experiment history
  3. Identify: core claims, methodology, key results, known weaknesses

Step 2: Initial Review (Round 1)

Send a detailed prompt. Always ask the external reviewer for strict, high-rigor feedback.

mcp__llm-chat__chat:
  prompt: |
    [Full research context + specific questions]

    Please act as a senior ML reviewer (NeurIPS/ICML level). Identify:
    1. Logical gaps or unjustified claims
    2. Missing experiments that would strengthen the story
    3. Narrative weaknesses
    4. Whether the contribution is sufficient for a top venue
    Please be brutally honest.

Step 3: Iterative Dialogue (Rounds 2-N)

llm-chat is stateless — every call is a fresh conversation. For follow-up rounds, include a verbatim summary of the prior round's review (criticisms, author responses, open questions) inside the new mcp__llm-chat__chat prompt.

For each round:

  1. Respond to criticisms with evidence/counterarguments
  2. Ask targeted follow-ups on the most actionable points
  3. Request specific deliverables: experiment designs, paper outlines, claims matrices

Key follow-up patterns:

  • "If we reframe X as Y, does that change your assessment?"
  • "What's the minimum experiment to satisfy concern Z?"
  • "Please design the minimal additional experiment package (highest acceptance lift per GPU week)"
  • "Please write a mock NeurIPS/ICML review with scores"
  • "Give me a results-to-claims matrix for possible experimental outcomes"

Step 4: Convergence

Stop iterating when:

  • Both sides agree on the core claims and their evidence requirements
  • A concrete experiment plan is established
  • The narrative structure is settled

Step 5: Document Everything

Save the full interaction and conclusions to a review document in the project root:

  • Round-by-round summary of criticisms and responses
  • Final consensus on claims, narrative, and experiments
  • Claims matrix (what claims are allowed under each possible outcome)
  • Prioritized TODO list with estimated compute costs
  • Paper outline if discussed

Update project memory/notes with key review conclusions.

Key Rules

  • Always ask the external reviewer for strict, high-rigor feedback
  • Send comprehensive context in Round 1 — the external model cannot read your files
  • Be honest about weaknesses — hiding them leads to worse feedback
  • Push back on criticisms you disagree with, but accept valid ones
  • Focus on ACTIONABLE feedback — "what experiment would fix this?"
  • llm-chat is stateless — include prior-round context in every follow-up prompt
  • The review document should be self-contained (readable without the conversation)

Prompt Templates

For initial review:

"I'm going to present a complete ML research project for your critical review. Please act as a senior ML reviewer (NeurIPS/ICML level)..."

For experiment design:

"Please design the minimal additional experiment package that gives the highest acceptance lift per GPU week. Our compute: [describe]. Be very specific about configurations."

For paper structure:

"Please turn this into a concrete paper outline with section-by-section claims and figure plan."

For claims matrix:

"Please give me a results-to-claims matrix: what claim is allowed under each possible outcome of experiments X and Y?"

For mock review:

"Please write a mock NeurIPS review with: Summary, Strengths, Weaknesses, Questions for Authors, Score, Confidence, and What Would Move Toward Accept."

Review Tracing

After each mcp__llm-chat__chat reviewer call, save the trace following shared-references/review-tracing.md. Write files directly to .mechanist/traces/<skill>/<date>_run<NN>/. Respect the --- trace: parameter (default: full).

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