agentleFS
zjunlpzjunlp/Mechanist/skills/ablation-planner/SKILL.md

ablation-planner

Skill75 starsChanged 4 months agoMITView on GitHub

Use when main results pass result-to-claim (claim_supported=yes or partial) and ablation studies are needed for paper submission. The external LLM reviewer (via llm-chat MCP) designs ablations from a reviewer's perspective, CC reviews feasibility and implements.

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5 other projects use a version of this, 5 of them edited.

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The file

We split this skill into the rules it gives an agent

10 rules. 5 are common, 1 is distinctive, and 4 are very specific to this project.

  • 5

    Common

    Most of the 5 edited versions we read keep these.

  • 1

    Distinctive

    This author's own choices. Worth a look.

  • 4

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Very specific:

    Hard-fail rule: If LLM_MODEL is empty after this resolution (none of the three sources provides it), the skill MUST abort with:

    line 50
  2. Very specific:

    Do not guess a default. Do not fall back to a model name read from task.md or any other project file.

    line 53
  3. Distinctive:

    Always ask the external reviewer for strict, high-rigor feedback.

    line 67
  4. Common:

    Before running anything, CC checks:

    line 136
  5. Common:

    Create configs/scripts for each ablation (config-only changes first)

    line 144
  6. Very specific:

    Run in suggested order, using descriptive names (e.g., ablation-no-module-X)

    line 146
  7. Common:

    After all ablations complete → update findings.md with insights

    line 148
  8. Very specific:

    Every ablation must have a clear what_it_tests and expected_if_component_matters.

    line 153
  9. Common:

    If total compute exceeds budget, CC proposes cuts and asks the external reviewer to re-prioritize — don't silently drop ablations.

    line 155
  10. Common:

    Do not generate ablations for components identical to the baseline (no-op ablations).

    line 157

“Common” is measured: kept by at least 6 in 10 of the 5 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Ablation Planner

Systematically design ablation studies that answer the questions reviewers will ask. The external LLM reviewer leads the design (reviewer perspective), CC reviews feasibility and implements.

Context: $ARGUMENTS

When to Use

  • Main results pass /result-to-claim with claim_supported = yes or partial
  • User explicitly requests ablation planning
  • /auto-iteration-loop reviewer identifies missing ablations

Reviewer LLM Configuration (mandatory, read first)

This skill calls an external LLM reviewer. Never hardcode a model name and never read the reviewer model from task.md / project READMEs / source comments. Project-level files may list available API keys for unrelated purposes (e.g., LLM-as-judge inside experiment code); those are not the reviewer config.

Resolve LLM_MODEL, LLM_BASE_URL, LLM_API_KEY strictly in this priority order before any reviewer call:

  1. Project MCP config — ${PROJECT_ROOT}/.mcp.json, field mcpServers["llm-chat"].env.{LLM_MODEL,LLM_BASE_URL,LLM_API_KEY}.
  2. User MCP config — ~/.claude/settings.json, same field.
  3. Shell environment — $LLM_MODEL, $LLM_BASE_URL, $LLM_API_KEY.

Pre-flight check (run before Step 2, mandatory)

LLM_MODEL_SRC=""
if [ -f .mcp.json ] && jq -e '.mcpServers["llm-chat"].env.LLM_MODEL' .mcp.json >/dev/null 2>&1 ; then
  export LLM_MODEL=$(jq -r '.mcpServers["llm-chat"].env.LLM_MODEL' .mcp.json)
  export LLM_BASE_URL=$(jq -r '.mcpServers["llm-chat"].env.LLM_BASE_URL' .mcp.json)
  export LLM_API_KEY=$(jq -r '.mcpServers["llm-chat"].env.LLM_API_KEY' .mcp.json)
  LLM_MODEL_SRC="project .mcp.json"
elif [ -f ~/.claude/settings.json ] && jq -e '.mcpServers["llm-chat"].env.LLM_MODEL' ~/.claude/settings.json >/dev/null 2>&1 ; then
  export LLM_MODEL=$(jq -r '.mcpServers["llm-chat"].env.LLM_MODEL' ~/.claude/settings.json)
  export LLM_BASE_URL=$(jq -r '.mcpServers["llm-chat"].env.LLM_BASE_URL' ~/.claude/settings.json)
  export LLM_API_KEY=$(jq -r '.mcpServers["llm-chat"].env.LLM_API_KEY' ~/.claude/settings.json)
  LLM_MODEL_SRC="user ~/.claude/settings.json"
elif [ -n "$LLM_MODEL" ] && [ -n "$LLM_BASE_URL" ] && [ -n "$LLM_API_KEY" ] ; then
  LLM_MODEL_SRC="shell env"
fi
echo "[reviewer-config] LLM_MODEL=$LLM_MODEL  LLM_BASE_URL=$LLM_BASE_URL  source=$LLM_MODEL_SRC"

Hard-fail rule: If LLM_MODEL is empty after this resolution (none of the three sources provides it), the skill MUST abort with:

"Reviewer model not configured. Add mcpServers.llm-chat.env.{LLM_MODEL,LLM_BASE_URL,LLM_API_KEY} to .mcp.json (project) or ~/.claude/settings.json (user)."

Do not guess a default. Do not fall back to a model name read from task.md or any other project file.

Workflow

Step 1: Prepare Context

CC reads available project files to build the full picture:

  • Method description and components (from docs/research_contract.md or project CLAUDE.md)
  • Current experiment results (from EXPERIMENT_LOG.md, EXPERIMENT_TRACKER.md, or W&B)
  • Confirmed and intended claims (from result-to-claim output or project notes)
  • Available compute resources (from CLAUDE.md server config, if present)

Step 2: External LLM Reviewer Designs Ablations

Always ask the external reviewer for strict, high-rigor feedback.

mcp__llm-chat__chat:
  prompt: |
    You are a rigorous ML reviewer planning ablation studies.
    Given this method and results, design ablations that:

    1. Isolate the contribution of each novel component
    2. Answer questions reviewers will definitely ask
    3. Test sensitivity to key hyperparameters
    4. Compare against natural alternative design choices

    Method: [description from project files]
    Components: [list of removable/replaceable components]
    Current results: [key metrics from experiments]
    Claims: [what we claim and current evidence]

    For each ablation, specify:
    - name: what to change (e.g., "remove module X", "replace Y with Z")
    - what_it_tests: the specific question this answers
    - expected_if_component_matters: what we predict if the component is important
    - priority: 1 (must-run) to 5 (nice-to-have)

    Also provide:
    - coverage_assessment: what reviewer questions these ablations answer
    - unnecessary_ablations: experiments that seem useful but won't add insight
    - suggested_order: run order optimized for maximum early information
    - estimated_compute: total GPU-hours estimate

Step 3: Parse Ablation Plan

Normalize the reviewer's response into structured format:

## Ablation Plan

### Component Ablations (highest priority)
| # | Name | What It Tests | Expected If Matters | Priority |
|---|------|---------------|---------------------|----------|
| 1 | remove module X | contribution of X | performance drops on metric Y | 1 |
| 2 | replace X with simpler Z | value of learned vs fixed | drops, especially on dataset A | 2 |

### Hyperparameter Sensitivity
| # | Parameter | Values to Test | What It Tests | Priority |
|---|-----------|---------------|---------------|----------|
| 3 | lambda | [0.01, 0.1, 1.0] | sensitivity to regularization | 3 |

### Design Choice Comparisons
| # | Name | What It Tests | Priority |
|---|------|---------------|----------|
| 4 | joint vs separate matching | whether joint adds value | 4 |

### Coverage Assessment
[What reviewer questions these ablations answer]

### Unnecessary Ablations
[Experiments that seem useful but won't add insight — skip these]

### Run Order
[Optimized for maximum early information]

### Estimated Compute
[Total GPU-hours]

Step 4: CC Reviews Feasibility

Before running anything, CC checks:

  • Compute budget: can we afford all ablations with available GPUs?
  • Code changes: which ablations need code modifications vs config-only changes?
  • Dependencies: which ablations can run in parallel?
  • Cuts: if budget is tight, propose removing lower-priority ablations and ask the external reviewer to confirm

Step 5: Implement and Run

  1. Create configs/scripts for each ablation (config-only changes first)
  2. Smoke test each ablation before full run
  3. Run in suggested order, using descriptive names (e.g., ablation-no-module-X)
  4. Track results in EXPERIMENT_LOG.md
  5. After all ablations complete → update findings.md with insights

Rules

  • The external LLM reviewer leads the design. CC does not pre-filter or bias the ablation list before the reviewer sees it. The reviewer thinks like a reviewer; CC thinks like an engineer.
  • Every ablation must have a clear what_it_tests and expected_if_component_matters. No "just try it" experiments.
  • Config-only ablations take priority over those needing code changes (faster, less error-prone).
  • If total compute exceeds budget, CC proposes cuts and asks the external reviewer to re-prioritize — don't silently drop ablations.
  • Component ablations (remove/replace) take priority over hyperparameter sweeps.
  • Do not generate ablations for components identical to the baseline (no-op ablations).
  • Record all ablation results in EXPERIMENT_LOG.md, including negative results (component removal had no effect = important finding).

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