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zjunlpzjunlp/Mechanist/skills/experiment-plan/SKILL.md

experiment-plan

Skill75 starsChanged 4 months agoMITView on GitHub

Turn a refined research proposal or method idea into a detailed, claim-driven experiment roadmap. Use after `research-refine`, or when the user asks for a detailed experiment plan, ablation matrix, evaluation protocol, run order, compute budget, or paper-ready validation that supports the core problem, novelty, simplicity, and any LLM / VLM / Diffusion / RL-based contribution.

8 other projects use a version of this, 6 of them edited.

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We split this skill into the rules it gives an agent

17 rules. 14 are common, 0 are distinctive, and 3 are very specific to this project.

  • 14

    Common

    Most of the 7 edited versions we read keep these.

  • 0

    Distinctive

    This author's own choices. Worth a look.

  • 3

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Very specific:

    Use this skill after the method is stable enough that the next question becomes: what exact experiments should we run, in what order, to …

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  2. Common:

    Read the most relevant existing files first if they exist:

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  3. Common:

    If these files do not exist, derive the same information from the user's prompt.

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  4. Common:

    Before proposing experiments, write down the claims that must be defended.

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  5. Very specific:

    Do not exceed MAX_PRIMARY_CLAIMS unless the paper truly has multiple inseparable claims.

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  6. Common:

    Prefer one strong baseline family over many weak baselines.

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  7. Common:

    Failure interpretation: if the result is negative, what does it mean?

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  8. Common:

    If the proposal is intentionally non-frontier, say so explicitly and skip the frontier block instead of forcing one.

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  9. Common:

    Use this milestone structure:

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  10. Common:

    stop / go decision gate

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  11. Common:

    Keep the tracker compact and execution-oriented.

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  12. Very specific:

    Large file handling: If the Write tool fails due to file size, immediately retry using Bash (cat << 'EOF' > file) to write in chunks.

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  13. Common:

    Every experiment must defend a claim: If it does not change a reviewer belief, cut it.

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  14. Common:

    Defend simplicity explicitly: If complexity is a concern, include a deletion study or a stronger-but-bloated variant comparison.

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  15. Common:

    Defend frontier choices explicitly: If a modern primitive is central, prove why it is better than the strongest simpler alternative.

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  16. Common:

    Separate must-run from nice-to-have: Do not let appendix ideas delay the core paper evidence.

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  17. Common:

    Reuse proposal constraints: Do not invent unrealistic budgets or data assumptions.

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“Common” is measured: kept by at least 6 in 10 of the 7 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Experiment Plan: Claim-Driven, Paper-Oriented Validation

Refine and concretize: $ARGUMENTS

Overview

Use this skill after the method is stable enough that the next question becomes: what exact experiments should we run, in what order, to defend the paper? If the user wants the full chain in one request, prefer /research-refine-pipeline.

The goal is not to generate a giant benchmark wishlist. The goal is to turn a proposal into a claim -> evidence -> run order roadmap that supports four things:

  1. the method actually solves the anchored problem
  2. the dominant contribution is real and focused
  3. the method is elegant enough that extra complexity is unnecessary
  4. any frontier-model-era component is genuinely useful, not decorative

Constants

  • OUTPUT_DIR = refine-logs/ — Default destination for experiment planning artifacts.
  • MAX_PRIMARY_CLAIMS = 2 — Prefer one dominant claim plus one supporting claim.
  • MAX_CORE_BLOCKS = 5 — Keep the must-run experimental story compact.
  • MAX_BASELINE_FAMILIES = 3 — Prefer a few strong baselines over many weak ones.
  • DEFAULT_SEEDS = 3 — Use 3 seeds when stochastic variance matters and budget allows.

Workflow

Phase 0: Load the Proposal Context

Read the most relevant existing files first if they exist:

  • refine-logs/FINAL_PROPOSAL.md
  • refine-logs/REVIEW_SUMMARY.md
  • refine-logs/REFINEMENT_REPORT.md

Extract:

  • Problem Anchor
  • Dominant contribution
  • Optional supporting contribution
  • Critical reviewer concerns
  • Data / compute / timeline constraints
  • Which frontier primitive is central, if any

If these files do not exist, derive the same information from the user's prompt.

Phase 1: Freeze the Paper Claims

Before proposing experiments, write down the claims that must be defended.

Use this structure:

  • Primary claim: the main mechanism-level contribution
  • Supporting claim: optional, only if it directly strengthens the main paper story
  • Anti-claim to rule out: e.g. "the gain only comes from more parameters," "the gain only comes from a larger search space," or "the modern component is just decoration"
  • Minimum convincing evidence: what would make each claim believable to a strong reviewer?

Do not exceed MAX_PRIMARY_CLAIMS unless the paper truly has multiple inseparable claims.

Phase 2: Build the Experimental Storyline

Design the paper around a compact set of experiment blocks. Default to the following blocks and delete any that are not needed:

  1. Main anchor result — does the method solve the actual bottleneck?
  2. Novelty isolation — does the dominant contribution itself matter?
  3. Simplicity / elegance check — can a bigger or more fragmented version be avoided?
  4. Frontier necessity check — if an LLM / VLM / Diffusion / RL-era component is central, is it actually the right tool?
  5. Failure analysis or qualitative diagnosis — what does the method still miss?

For each block, decide whether it belongs in:

  • Main paper — essential to defend the core claims
  • Appendix — useful but non-blocking
  • Cut — interesting, but not worth the paper budget

Prefer one strong baseline family over many weak baselines. If a stronger modern baseline exists, use it instead of padding the list.

Phase 3: Specify Each Experiment Block

For every kept block, fully specify:

  • Claim tested
  • Why this block exists
  • Dataset / split / task — also state data provenance (existing = an existing dataset used as-is, adapted = an existing dataset transformed/relabeled/filtered, constructed = built from scratch / synthetic), the source (dataset name, or construction method when constructed), the total available size of that source (available_n), and the planned amount this project will actually use (used_n). When used_n < available_n, state how/why it is subsetted. Budget-gate the subset: subset only when a scientific reason applies (a ladder-of-evidence screen, or the full set genuinely exceeds the declared GPU / compute budget) — do not subset merely to save cost when task.md declares a budget that covers the full available_n; in that case plan used_n = available_n at the user's named model size. A declared, generous budget is a mandate to run at fuller scale, not just an upper bound (see /auto-experiment GPU-budget rule).
  • Compared systems: strongest baselines, ablations, and variants only
  • Metrics: decisive metrics first, secondary metrics second
  • Setup details: backbone, frozen vs trainable parts, key hyperparameters, training budget, seeds
  • Success criterion: what outcome would count as convincing evidence?
  • Failure interpretation: if the result is negative, what does it mean?
  • Table / figure target: where this result should appear in the paper

Special rules:

  • A simplicity check should usually compare the final method against either an overbuilt variant or a tempting extra component that the paper intentionally rejects.
  • A frontier necessity check should usually compare the chosen modern primitive against the strongest plausible simpler or older alternative.
  • If the proposal is intentionally non-frontier, say so explicitly and skip the frontier block instead of forcing one.

Phase 4: Turn the Plan Into an Execution Order

Build a realistic run order so the user knows what to do first.

Use this milestone structure:

  1. Sanity stage — data pipeline, metric correctness, one quick overfit or toy split
  2. Baseline stage — reproduce the strongest baseline(s)
  3. Main method stage — run the final method on the primary setting
  4. Decision stage — run the decisive ablations for novelty, simplicity, and frontier necessity
  5. Polish stage — robustness, qualitative figures, appendix extras

For each milestone, estimate:

  • compute cost
  • expected turnaround time
  • stop / go decision gate
  • risk and mitigation

Separate must-run from nice-to-have experiments.

Phase 5: Write the Outputs

Step 5.1: Write refine-logs/EXPERIMENT_PLAN.md

Use this structure:

# Experiment Plan

**Problem**: [problem]
**Method Thesis**: [one-sentence thesis]
**Date**: [today]

## Claim Map
| Claim | Why It Matters | Minimum Convincing Evidence | Linked Blocks |
|-------|-----------------|-----------------------------|---------------|
| C1    | ...             | ...                         | B1, B2        |

## Paper Storyline
- Main paper must prove:
- Appendix can support:
- Experiments intentionally cut:

## Experiment Blocks

### Block 1: [Name]
- Claim tested:
- Why this block exists:
- Dataset / split / task:
  - Provenance: existing | adapted | constructed
  - Source (name, or construction method if constructed):
  - Available N (total in source pool):
  - Planned used N (this project):
  - Subset note (only if planned used N < available N):
- Compared systems:
- Metrics:
- Setup details:
- Success criterion:
- Failure interpretation:
- Table / figure target:
- Priority: MUST-RUN / NICE-TO-HAVE

### Block 2: [Name]
...

## Run Order and Milestones
| Milestone | Goal | Runs | Decision Gate | Cost | Risk |
|-----------|------|------|---------------|------|------|
| M0        | ...  | ...  | ...           | ...  | ...  |

## Compute and Data Budget
- Total estimated GPU-hours:
- Data preparation needs:
- Human evaluation needs:
- Biggest bottleneck:

## Risks and Mitigations
- [Risk]:
- [Mitigation]:

## Final Checklist
- [ ] Main paper tables are covered
- [ ] Novelty is isolated
- [ ] Simplicity is defended
- [ ] Frontier contribution is justified or explicitly not claimed
- [ ] Nice-to-have runs are separated from must-run runs

Step 5.2: Write refine-logs/EXPERIMENT_TRACKER.md

Use this structure:

# Experiment Tracker

| Run ID | Milestone | Purpose | System / Variant | Split | Metrics | Priority | Status | Notes |
|--------|-----------|---------|------------------|-------|---------|----------|--------|-------|
| R001   | M0        | sanity  | ...              | ...   | ...     | MUST     | TODO   | ...   |

Keep the tracker compact and execution-oriented.

Step 5.3: Present a Brief Summary to the User

Experiment plan ready.

Must-run blocks:
- [Block 1]
- [Block 2]

Highest-risk assumption:
- [risk]

First three runs to launch:
1. [run]
2. [run]
3. [run]

Plan file: refine-logs/EXPERIMENT_PLAN.md
Tracker file: refine-logs/EXPERIMENT_TRACKER.md

Output Protocols

Follow these shared protocols for all output files:

  • Output Versioning Protocol — write timestamped file first, then copy to fixed name
  • Output Manifest Protocol — log every output to MANIFEST.md
  • Output Language Protocol — respect the project's language setting

Key Rules

  • Large file handling: If the Write tool fails due to file size, immediately retry using Bash (cat << 'EOF' > file) to write in chunks. Do NOT ask the user for permission — just do it silently.
  • Every experiment must defend a claim. If it does not change a reviewer belief, cut it.
  • Prefer a compact paper story. Design the main table first, then add only the ablations that defend it.
  • Defend simplicity explicitly. If complexity is a concern, include a deletion study or a stronger-but-bloated variant comparison.
  • Defend frontier choices explicitly. If a modern primitive is central, prove why it is better than the strongest simpler alternative.
  • Prefer strong baselines over long baseline lists. A short, credible comparison set is better than a padded one.
  • Separate must-run from nice-to-have. Do not let appendix ideas delay the core paper evidence.
  • Reuse proposal constraints. Do not invent unrealistic budgets or data assumptions.
  • Do not fabricate results. Plan evidence; do not claim evidence.

Composing with Other Skills

/research-refine-pipeline -> one-shot method + experiment planning
/research-refine   -> method and claim refinement
/experiment-plan   -> detailed experiment roadmap
/run-experiment    -> execute the runs
/auto-iteration-loop  -> react to results and iterate on the paper

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