exploratory-data-analysis
Skill1 starsChanged 4 days agoMITView on GitHub
Explore and profile an unfamiliar dataset before modeling or analysis — structural profiling, missingness structure, distributions and outliers, feature–target relationships, leakage awareness, and explicit hypothesis generation. Pipeline-level data trust (broken dashboards, tests, contracts, freshness) → data-quality; formal inference on the hypotheses → statistical-analysis.
27 other projects use a version of this.
Adopted by
Most recently taken up by
- shisuidata/ss-data-skillstheir own version, first seen Nov 8, 2026
- BrightGold70/skillstheir own version, first seen Nov 8, 2026
- MarieLynneBlock/arcanum-artifextheir own version, first seen Nov 1, 2026
- JPeetz/agent-skillstheir own version, first seen Nov 1, 2026
- Big-LAORE/Biblioth-que-de-skillstheir own version, first seen Nov 1, 2026
- PaulDanielYoung/internal-audit-skillstheir own version, first seen Nov 1, 2026
Other versions27 projects use a version of this.
Word for word · 0
None found.
Edited · 0
None found.
Wrote their own version · 27
- wu-yc/LabClaw★ 1.1ksame name
- LeonChaoX/qinyan-academic-skills★ 910same name
- jaechang-hits/SciAgent-Skills★ 386same name
- qinyan-ai/qinyan-academic-skills★ 80same name
- Barrios88/barrios-skills★ 63same name
- ZanderRuss/obsidian-claude★ 19same name
- JPeetz/agent-skills★ 14same name
- fmschulz/omics-skills★ 9same name
- shisuidata/ss-data-skills★ 8same name
- MarieLynneBlock/arcanum-artifex★ 4same name
17 more not listed
How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository68 other files it gives its agents.
- AGENTS.mdAGENTS.md
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- configuration-strategySkill
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- data-pipeline-designSkill
- data-qualitySkill
- dependency-impact-analysisSkill
- dependency-managementSkill
- deployment-checklistSkill
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- effort-estimationSkill
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- llm-app-engineeringSkill
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- mobile-architectureSkill
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- The first 60 shown.
The file
We split this skill into the rules it gives an agent
3 rules. 0 are common, 3 are distinctive, and 0 are very specific to this project.
0
Common
Most of the 25 edited versions we read keep these.
3
Distinctive
This author's own choices. Worth a look.
0
Very specific
Tied to their project's names, files or tools. Probably skip.
- Common
- Distinctive
- Very specific
- Distinctive: line 24
Before profiling anything, write down what decision or model this data will feed, and establish the grain: what does one row represent (an …
- Distinctive: line 43
If the data doesn't fit in memory: push aggregations down to the warehouse (SQL), or use an out-of-core/lazy engine (DuckDB, Polars).
- Distinctive: line 76
If the data will feed a model:
“Common” is measured: kept by at least 6 in 10 of the 25 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Files
Exploratory Data Analysis
Understand a dataset before trusting it with a model or a decision. The output of EDA is not a pile of statistics — it is a documented understanding: what the data is, what's wrong or surprising in it, and a set of explicit hypotheses to test next. Every step below feeds that document.
Workflow
1. Frame the goal and the grain
When the data is supposed to be right and isn't — a dashboard showing wrong
numbers, a scheduled load that broke — that is a pipeline-trust problem for
data-quality, not an unfamiliar dataset: say by name that data-quality owns it,
and point at where to look (source freshness, tests, schema drift, the upstream
contract, lineage). Don't answer it with this skill's profiling workflow.
Before profiling anything, write down what decision or model this data will feed, and establish the grain: what does one row represent (an order? a customer? a customer-month?)? Duplicate keys and mixed grains invalidate every later statistic. If the eventual use is prediction, note when the prediction would be made — that timestamp drives the leakage checks in step 5.
Also establish which source is authoritative: the curated table rather than
the raw inputs it was built from (trace how it's produced — code-archaeology —
when that isn't documented), and which fields are validated measurements versus
informational ones (estimates, free text, fields only some forms collected).
Profiling the wrong table produces a confident description of the wrong data.
2. Profile structurally
Column types, ranges, cardinality, and summary statistics for every column — cheaply, before any deep dive. Triage wide tables by metadata first (null rate, cardinality, type) and prioritize columns by relevance to the goal; don't profile 400 columns equally.
If the data doesn't fit in memory: push aggregations down to the warehouse
(SQL), or use an out-of-core/lazy engine (DuckDB, Polars). When you sample,
sample representatively — random or stratified, never head() (files are
usually ordered by time or id) — and state the caveat that rare events and
extreme outliers can be missed under sampling; verify those against the full
data with targeted queries.
3. Map the missingness structure
Null counts are the start, not the answer. Distinguish:
- Random gaps — sporadic nulls, roughly uniform across segments.
- Structural missingness — a column populated only for some segment, after some date, or by some source system. Cross-tab null rates against segments and time to find these.
- Informative missingness — where the fact that a value is missing predicts the outcome (e.g., income missing for churned users). Flag it; it may be a feature, or it may be leakage.
Also check for disguised missing values: sentinel codes (0, -1, 999, "unknown", empty string) that aren't NULL.
4. Distributions and outliers
For key numeric columns: quantiles, histograms, and an outlier pass (IQR or similar). For categoricals: frequency tables and rare-level counts. Decide for each outlier cluster whether it is a data error, a unit mismatch, or a genuine tail — never drop outliers before classifying them; genuine tails are often the interesting part. Check skew before assuming any statistic (mean, std) is representative.
5. Target definition, balance, and leakage
If the data will feed a model:
- Define the target explicitly (e.g., "churn = no order in 90 days after cutoff") and check its class balance — a 2% positive rate changes the whole modeling and evaluation approach downstream.
- Hunt for leakage: any column recorded at-or-after the outcome (cancellation reason, final status, updated_at aggregates), and proxies that encode the outcome indirectly. Test: "would this value exist at prediction time?" If unsure, trace how the column is produced. A too-good correlation with the target is a leakage smell, not a win.
6. Relationships, not just profiles
Univariate profiles alone don't generate hypotheses. Examine bivariate structure: correlations among candidate features, and each candidate feature against the target (grouped rates, means by decile, simple cross-tabs). Note confounders — a feature↔target association may be explained by segment or time. This is where most real hypotheses come from.
7. Write the hypotheses and hand off
Close with a short findings document: data issues found, columns excluded and
why (especially leakage suspects), and explicit hypotheses phrased as
testable statements ("weekend signups churn more", "the price effect is
driven by segment X") plus open questions for the data owners. Formal testing
of those hypotheses is statistical-analysis territory; feature/training
pipeline work is ml-pipeline-design.
Principles
- KISS: value counts and group-by rates beat clever visualizations for finding problems fast.
- YAGNI: profile to the goal — an exhaustive 400-column report nobody reads is not EDA.
- Honest accounting: record what you did NOT check (columns skipped, sample-size limits) in the findings doc.
Cross-skill boundaries
- Bad data in a pipeline or dashboard (freshness, contracts, dbt tests, lineage) → data-quality — that's an operational trust problem, not exploration of an unfamiliar dataset.
- Formal hypothesis testing, experiment design, significance → statistical-analysis.
- Turning the analysis into scheduled production code → notebook-to-production.
- Schema design for storing the data → data-modeling.
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