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JiamingShi-JsPhysJiamingShi-JsPhys/chelate-shell/skills/sci-visualizer/SKILL.md

sci-visualizer

Skill10 starsChanged 6 days agoMITView on GitHub

Generation meta-skill: renders static scientific charts from tabular data and scans gif/animation frame sequences. Successor to `figure-generator`, adding the gif path and four chart types.

The file

We split this skill into the rules it gives an agent

1 rule. About 0 are common, 1 is distinctive, and 0 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈1

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Run this exact form — do not read the source tree:

    line 25

≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

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Files
SKILL.md

sci-visualizer

Produces figures and inspects frame sequences. It renders what the data says and never invents points.

  • Stage: generation · Sandbox: no · Dependencies: matplotlib, seaborn, pandas (Pillow optional for gif frames)

Quick Execution

Run this exact form — do not read the source tree:

python run.py --root <WS> --action process --input data.csv --chart bar
  • --type {static,gif,animation} selects the mode; --chart takes bar|line|scatter|box.
  • --x, --y, --hue, --title shape the figure.
  • Output lands in <WS>/process/figures/; the gate in <WS>/process/gates/.

When to use

  • A dataset needs a publication-quality chart.
  • A gif or frame sequence must be inspected frame by frame.

When NOT to use

  • An interactive or 3D visualisation — out of scope (3d-modeler makes meshes, not plots).
  • The figure must be hand-composed.

Actions

--actionDoesExtra arguments
processRender the figure or scan frames--input <csv|json|gif> [--type ...] [--chart ...] [--x --y --hue --title]

Hard constraints

  • Never fabricate data points.
  • Never drop rows silently — report what was plotted.

Outputs

  • <WS>/process/figures/<name>.png — the rendered figure.
  • <WS>/process/gates/sci-visualizer_<ts>.json — the gate result.

Failure handling

  • A missing column fails the gate naming that column.
  • matplotlib/seaborn/pandas missing → UNVERIFIED.

Limitations

  • Static output; gif support is a frame scan, not video rendering.
  • Four chart types plus the SEM renderer.

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