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JiamingShi-JsPhysJiamingShi-JsPhys/chelate-shell/skills/bibtex-normalizer/SKILL.md

bibtex-normalizer

Skill10 starsChanged 6 days agoMITView on GitHub

Parses a `.bib` file, removes duplicate entries and writes a normalised bibliography in a fixed field order. Fires before any citation-dependent stage so downstream tools see one consistent shape.

The file

We split this skill into the rules it gives an agent

2 rules. About 0 are common, 2 are distinctive, and 0 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈2

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Run this exact form — do not read the source tree:

    line 25
  2. Distinctive:

    No network lookup; no metadata completion.

    line 67

≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

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Files
SKILL.md

bibtex-normalizer

Normalises and de-duplicates a bibliography. It does not look up missing metadata and does not verify that an entry exists.

  • Stage: ingest · Sandbox: no · Dependencies: bibtexparser

Quick Execution

Run this exact form — do not read the source tree:

python run.py --root <WS> --action normalize --input refs.bib
  • Output defaults to <WS>/process/bibtex/; override with --outdir.
  • The gate lands in <WS>/process/gates/bibtex-normalizer_<ts>.json.

When to use

  • Several .bib exports must be merged into one consistent file.
  • Duplicate entries must be removed before a build or a citation check.

When NOT to use

  • The entries themselves must be verified — that is reference-auditor.
  • Missing fields must be filled from the web — not supported.

Actions

--actionDoesExtra arguments
normalizeParse, dedupe, normalise field order--input <file.bib> [--outdir <dir>]

Hard constraints

  • Never invent metadata. Absent fields stay absent.
  • Dedupe by content key, and report what was dropped.

Outputs

  • <WS>/process/bibtex/ — the normalised .bib plus a JSON summary.
  • <WS>/process/gates/bibtex-normalizer_<ts>.json — the gate result.

Failure handling

  • A malformed .bib fails the gate with the parser's message.
  • bibtexparser missing → UNVERIFIED.

Limitations

  • No network lookup; no metadata completion.
  • Non-standard entry types are preserved but not validated.

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