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JiamingShi-JsPhysJiamingShi-JsPhys/chelate-shell/skills/data-profiler/SKILL.md

data-profiler

Skill10 starsChanged 7 days agoMITView on GitHub

Profiles a CSV with pandas: row and column counts, per-column missing-value statistics, 1.5·IQR outlier ratios, duplicate rows and constant columns. It certifies that the file was read and characterised — never that it is clean.

3 other projects use a version of this.

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The file

We split this skill into the rules it gives an agent

2 rules. About 0 are common, 2 are distinctive, and 0 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈2

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Run this exact form — do not read the source tree:

    line 25
  2. Distinctive:

    Before any analysis of a new CSV.

    line 37

≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

data-profiler

Produces the first look at a dataset and reports what is in it. A PASS means 'characterised', never 'clean'. The profiler never modifies the input.

  • Stage: gates · Sandbox: no · Dependencies: pandas

Quick Execution

Run this exact form — do not read the source tree:

python run.py --root <WS> --action profile --input data.csv
  • The gate lands in <WS>/process/gates/data-profiler_<ts>.json; the full profile in <WS>/process/data_profile_<stem>_<ts>.json.
  • Missing values, outliers and duplicates are reported, not failed.

When to use

  • Before any analysis of a new CSV.
  • Sanity-checking exported lab data.
  • Comparing datasets across experiment rounds.

When NOT to use

  • Statistical modelling — that is longitudinal-analysis.
  • Cleaning or imputing data — the profiler never writes.
  • Datasets too large for memory.

Actions

--actionDoesExtra arguments
profileProfile the CSV--input <data.csv>

Hard constraints

  • Missing values and outliers are REPORTED, not FAIL.
  • FAIL means unreadable, empty or header-only.
  • The input CSV is never modified.

Outputs

  • <WS>/process/data_profile_<stem>_<ts>.json — the full profile.
  • <WS>/process/gates/data-profiler_<ts>.json — the gate result.

Failure handling

  • An unreadable or empty CSV fails the gate.
  • A header-only file is a FAIL (no rows to characterise).
  • pandas missing → UNVERIFIED.

Limitations

  • Numeric-only outliers; non-numeric columns get counts only.
  • The Tukey multiplier is assets/config.yaml (default 1.5).

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