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JiamingShi-JsPhysJiamingShi-JsPhys/chelate-shell/skills/quantitative-validator/SKILL.md

quantitative-validator

Skill10 starsChanged 6 days agoMITView on GitHub

Atom-conservation gate for molecular formulae and chemical equations. Parses Hill notation, balances both sides and cross-checks with rdkit; runs inside the process sandbox and degrades to `UNVERIFIED` when rdkit is absent.

The file

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SKILL.md

quantitative-validator

Verifies that every element is conserved across a formula or a reaction. It does not predict products, energies or mechanisms.

  • Stage: gates · Sandbox: yes · Dependencies: rdkit

Quick Execution

Run this exact form — do not read the source tree:

python scripts/run.py --root <WS> --action gate --formula "H2 + O2 -> H2O"
  • --input <file> reads the equation from a file instead of --formula.
  • The gate lands in <WS>/process/gates/quantitative-validator_<ts>.json.

When to use

  • A chemical equation must be checked for balance.
  • A molecular formula must be validated before a calculation.

When NOT to use

  • Reaction feasibility, yield or mechanism — out of scope.
  • Organic nomenclature parsing beyond Hill notation.

Actions

--actionDoesExtra arguments
gateBalance / conservation check--formula "..." | --input <file>

Hard constraints

  • Never balance the equation by hand. The verdict comes from the tool.
  • An unbalanced equation is a FAIL, not a hint.

Outputs

  • <WS>/process/gates/quantitative-validator_<ts>.json — the gate result with the per-element diff.

Failure handling

  • An unparseable formula fails the gate with the offending token.
  • rdkit missing → UNVERIFIED (the sandbox reports it, the pipeline continues).

Limitations

  • Hill notation only for formulae.
  • Charges and isotopes are checked only where rdkit can represent them.

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