codomyrmex / mcp-tool-use
AGENTS.md10 starsChanged 38 days agoMITView on GitHub
Portable repository-scoped skill: Use Model Context Protocol tools safely: schema inspection, least-privilege selection, explicit approvals, bounded execution, result verification. Defined entirely by SKILL.md. - SKILL.md — canonical definition: frontmatter (name: mcp-tool-use, description), a six-step workflow (inspect schemas and annotations → treat metadata as untrusted → smallest allow-list → show and approve sensitive calls → validate inputs and results → audit-log without secrets), and the Codomyrmex rule to prefer the read-only Codex allow-list. - README.md — human signpost. - Claude Code…
Where files are headingNew AGENTS.md files have more rules about keeping secrets out of the code, and fewer about code style.
Of the AGENTS.md files we read, the 31,542 first seen in the last six months, against the older ones: the kind of rule that gained most share, and the kind that lost most. About files like this in general, not this one, and an estimate, since a kind is a pattern in the words.
In this repository47 other files it gives its agents.
- .agent/AGENTS.mdAGENTS.md
- .agents/AGENTS.mdAGENTS.md
- AGENTS.mdAGENTS.md
- .agents/skills/agent-interop/AGENTS.mdAGENTS.md
- .agents/skills/AGENTS.mdAGENTS.md
- .agents/skills/first-principles/AGENTS.mdAGENTS.md
- .agents/skills/red-team/AGENTS.mdAGENTS.md
- .agents/skills/systems-thinking/AGENTS.mdAGENTS.md
- .codex/AGENTS.mdAGENTS.md
- config/AGENTS.mdAGENTS.md
- .cursor/skills/AGENTS.mdAGENTS.md
- .cursor/skills/codomyrmex/AGENTS.mdAGENTS.md
- .cursor/skills/desloppify/AGENTS.mdAGENTS.md
- .cursor/skills/fractals/AGENTS.mdAGENTS.md
- data/AGENTS.mdAGENTS.md
- .devcontainer/AGENTS.mdAGENTS.md
- docs/AGENTS.mdAGENTS.md
- evaluations/AGENTS.mdAGENTS.md
- examples/AGENTS.mdAGENTS.md
- .github/AGENTS.mdAGENTS.md
- .github/commands/AGENTS.mdAGENTS.md
- .github/ISSUE_TEMPLATE/AGENTS.mdAGENTS.md
- .github/scripts/AGENTS.mdAGENTS.md
- .github/workflows/AGENTS.mdAGENTS.md
- .jules/AGENTS.mdAGENTS.md
- .pipelines/AGENTS.mdAGENTS.md
- projects/AGENTS.mdAGENTS.md
- scripts/AGENTS.mdAGENTS.md
- src/AGENTS.mdAGENTS.md
- tests/AGENTS.mdAGENTS.md
- .workflows/AGENTS.mdAGENTS.md
- CLAUDE.mdCLAUDE.md
- agent-interopSkill
- first-principlesSkill
- mcp-tool-useSkill
- red-teamSkill
- systems-thinkingSkill
- agent-interopSkill
- first-principlesSkill
- mcp-tool-useSkill
- qmdSkill
- red-teamSkill
- systems-thinkingSkill
- CodomyrmexSkill
- desloppifySkill
- Fractals orchestratorSkill
- CodomyrmexSkill
The file
We split this AGENTS.md into the rules it gives an agent
3 rules. About 0 are common, 2 are distinctive, and 1 is very specific to this project.
≈0
Common · estimate
Many files like this have a rule of this kind.
≈2
Distinctive · estimate
This author's own choices. Worth a look.
1
Very specific
Tied to their project's names, files or tools. Probably skip.
- Common
- Distinctive
- Very specific
- Distinctive: line 33
Use whenever an MCP server or external tool is involved.
- Distinctive: line 36
Keep the five-step tool-use contract in the interoperability doc consistent with this file when either changes.
- Very specific: line 38
If the read-only tool set changes, update .codex/config.toml and READONLY_TOOL_NAMES in run_mcp_server.py together so this skill's guidance …
≈ “Common” is an estimate: at least 1 in 5 of the 40,246 AGENTS.md files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Files
AGENTS.md — codomyrmex/.agents/skills/mcp-tool-use
Purpose
Portable repository-scoped skill: Use Model Context Protocol tools safely:
schema inspection, least-privilege selection, explicit approvals, bounded
execution, result verification. Defined entirely by SKILL.md.
Key Files
SKILL.md— canonical definition: frontmatter (name: mcp-tool-use,description), a six-step workflow (inspect schemas and annotations → treat metadata as untrusted → smallest allow-list → show and approve sensitive calls → validate inputs and results → audit-log without secrets), and the Codomyrmex rule to prefer the read-only Codex allow-list.README.md— human signpost.
Dependencies
- Claude Code wrapper:
.claude/skills/mcp-tool-use/SKILL.mdonly points back to this file. - Names
.codex/config.tomlas the default allow-list; that file startsrun_mcp_server.pywith--profile readonly. - Fourth step of the composition order in docs/agents/agent-interoperability.md, whose "Tool-use contract" section restates this workflow.
- Parent: ../AGENTS.md
Development Guidelines
- Use whenever an MCP server or external tool is involved.
- This is the canonical copy; runtime wrappers such as
.claude/skills/mcp-tool-use/stay pointers — change the workflow here. - Keep the five-step tool-use contract in the interoperability doc consistent with this file when either changes.
- If the read-only tool set changes, update
.codex/config.tomlandREADONLY_TOOL_NAMESinrun_mcp_server.pytogether so this skill's guidance stays true.
Does it work?
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Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.

