ensembl-annotation
Skill20 starsChanged 8 months agoAGPL-3.0View on GitHub
Query the Ensembl REST API for regulatory feature annotations, variant effect prediction (VEP), coordinate liftover, gene lookups, and cross-references. Use when the user needs to annotate variants with VEP (consequence, CADD, REVEL, SpliceAI), check Ensembl Regulatory Build overlap for ENCODE regions, convert coordinates between GRCh37 and GRCh38, resolve gene IDs (Ensembl ↔ symbol ↔ RefSeq), look up gene phenotype associations, or cross-reference ENCODE targets with Ensembl annotations. Also use when the user mentions Ensembl, VEP, variant effect predictor, liftover, assembly conversion, regulatory build, gene lookup, or cross-references between databases.
- Sends data out
In this repository46 other files it gives its agents.
- accessibility-aggregationSkill
- batch-analysisSkill
- bioinformatics-installerSkill
- cellxgene-contextSkill
- cite-encodeSkill
- clinvar-annotationSkill
- compare-biosamplesSkill
- cross-referenceSkill
- data-provenanceSkill
- disease-researchSkill
- download-encodeSkill
- epigenome-profilingSkill
- functional-screen-analysisSkill
- geo-connectorSkill
- gnomad-variantsSkill
- gtex-expressionSkill
- gwas-catalogSkill
- hic-aggregationSkill
- histone-aggregationSkill
- integrative-analysisSkill
- jaspar-motifsSkill
- liftover-coordinatesSkill
- methylation-aggregationSkill
- motif-analysisSkill
- multi-omics-integrationSkill
- peak-annotationSkill
- pipeline-atacseqSkill
- pipeline-chipseqSkill
- pipeline-cutandrunSkill
- pipeline-dnaseseqSkill
- pipeline-guideSkill
- pipeline-hicSkill
- pipeline-rnaseqSkill
- pipeline-wgbsSkill
- publication-trustSkill
- quality-assessmentSkill
- regulatory-elementsSkill
- scientific-writingSkill
- scrna-meta-analysisSkill
- search-encodeSkill
- setupSkill
- single-cell-encodeSkill
- track-experimentsSkill
- ucsc-browserSkill
- variant-annotationSkill
- visualization-workflowSkill
The file
We split this skill into the rules it gives an agent
5 rules. About 0 are common, 4 are distinctive, and 1 is very specific to this project.
≈0
Common · estimate
Many files like this have a rule of this kind.
≈4
Distinctive · estimate
This author's own choices. Worth a look.
1
Very specific
Tied to their project's names, files or tools. Probably skip.
Licensed with conditions — read it at the source. We count its rules but don't quote them. Read them on GitHub.
≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
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