paperclip
Skill1 starsChanged 53 days agoNo licenceView on GitHub
Search and read full-text biomedical papers, FDA/PMDA/EMA regulatory documents, clinical trial registries, and UniProt/PDB/ChEMBL entries with the Paperclip CLI from GXL. Covers installing and authenticating the `paperclip` binary with a PAPERCLIP_API_KEY, the read-only virtual filesystem under /papers, /fda, /trials, /proteins and /clipboard, source-scoped semantic search, corpus-wide grep, metadata lookup and SQL, map/reduce reading across many papers, figure vision analysis, opt-in paper repositories with claim verification, and line-pinned citations. Use when asked to install paperclip, run paperclip search/grep/map/reduce/sql/repo, find or read biomedical literature, regulatory filings or clinical trials through paperclip, or produce citations with line numbers.
- Pipes a download into a shell
- Reads credentials
12 other projects use a version of this.
Adopted by
Most recently taken up by
- ryanmaclean/skillstheir own version, first seen Nov 1, 2026
- maratmu1988-afk/medical-researchtheir own version, first seen Oct 20, 2026
- Hans010101/bitworldtheir own version, first seen Oct 20, 2026
- patoangolano/bio-stacktheir own version, first seen Oct 15, 2026
- OpenSourcx/paperclipedtheir own version, first seen Oct 13, 2026
- amanning3390/hermeshubtheir own version, first seen Oct 8, 2026
Other versions12 projects use a version of this.
Word for word · 0
None found.
Edited · 0
None found.
Wrote their own version · 12
- paperclipai/paperclip★ 112ksame name
- amanning3390/hermeshub★ 48same name
- ckorhonen/claude-skills★ 17same name
- OpenSourcx/papercliped★ 12same name
- Hans010101/bitworld★ 1same name
- jpoindexter/theft-kit★ 1same name
- maratmu1988-afk/medical-research★ 1same name
- microsoft/amplifier-app-paperclip★ 1same name
- ryanmaclean/skills★ 1same name
- ajsai47/aic-agi★ 0same name
2 more not listed
How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository191 other files it gives its agents.
- adaptyvSkill
- aeonSkill
- alphagenomeSkill
- analytical-method-validationSkill
- anndataSkill
- arboretoSkill
- arborSkill
- astropySkill
- autoskillSkill
- benchling-integrationSkill
- bgpt-paper-searchSkill
- bidsSkill
- biopythonSkill
- bioservicesSkill
- bulk-rnaseqSkill
- cellxgene-censusSkill
- cirqSkill
- citation-managementSkill
- clinical-decision-supportSkill
- clinical-reportsSkill
- cobrapySkill
- consciousness-councilSkill
- daskSkill
- database-lookupSkill
- dataladSkill
- datamolSkill
- deepchemSkill
- deepspot-mSkill
- deeptoolsSkill
- depmapSkill
- dhdna-profilerSkill
- diffdockSkill
- dnanexus-integrationSkill
- docxSkill
- esmSkill
- etetoolkitSkill
- exa-searchSkill
- experimental-designSkill
- exploratory-data-analysisSkill
- flowioSkill
- fluidsimSkill
- folklore-variant-evidenceSkill
- generate-imageSkill
- genimlSkill
- genomic-coordinatesSkill
- genomic-intelligenceSkill
- geomasterSkill
- geopandasSkill
- get-available-resourcesSkill
- ggetSkill
- ginkgo-cloud-labSkill
- glycoengineeringSkill
- gtarsSkill
- histolabSkill
- hugging-scienceSkill
- hypogenicSkill
- hypothesis-generationSkill
- imaging-data-commonsSkill
- infographicsSkill
- iso-standards-readinessSkill
- The first 60 shown.
The file
We split this skill into the rules it gives an agent
12 rules. 0 are common, 2 are distinctive, and 10 are very specific to this project.
0
Common
Most of the 11 edited versions we read keep these.
2
Distinctive
This author's own choices. Worth a look.
10
Very specific
Tied to their project's names, files or tools. Probably skip.
No licence file, so all rights are reserved — read it at the source. We count its rules but don't quote them. Read them on GitHub.
“Common” is measured: kept by at least 6 in 10 of the 11 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
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Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.