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LuooopsLuooops/skills/deeptools/SKILL.md

deeptools

Skill1 starsChanged 51 days agoNo licenceView on GitHub

NGS analysis toolkit. BAM to bigWig conversion, QC (correlation, PCA, fingerprints), heatmaps/profiles (TSS, peaks), for ChIP-seq, RNA-seq, ATAC-seq visualization.

  • Installs packages

10 other projects use a version of this, 10 of them edited.

Adopted by

Most recently taken up by

Used with

Projects with it also use uspto-database, string-database and 2 more.

Other files people use alongside this one.

Files found in the same public projects as a version of this one, more often than they turn up anywhere else. Each project counts once, large collections count for less, and this file's own repository is left out.
  • yf8578Skill

    uspto-database

    Access USPTO APIs for patent/trademark searches, examination history (PEDS), assignments, citations, office actions, TSDR, for IP analysis and prior art searches.

    Also in 6 projects that use this

  • Google DeepMindSkill

    string-database

    Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specific proteins, interaction evidence, confidence scores, protein interaction partners, or pathway enrichments.

    Also in 7 projects that use this

  • refly-aiSkill

    alpha-vantage

    Get financial data from Alpha Vantage. Use when you need to: (1) retrieve stock quotes and prices, (2) get forex or crypto rates, or (3) access market analytics data.

    Also in 4 projects that use this

  • Google DeepMindSkill

    uniprot-database

    Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or retrieving functional annotations and publications. Don't use for sequence alignment, protein folding, or sequence similarity search (use specialized skills for those tasks).

    Also in 6 projects that use this

The file

Show its rules and text

We split this skill into the rules it gives an agent

33 rules. 25 are common, 0 are distinctive, and 8 are very specific to this project.

  • 25

    Common

    Most of the 10 edited versions we read keep these.

  • 0

    Distinctive

    This author's own choices. Worth a look.

  • 8

    Very specific

    Tied to their project's names, files or tools. Probably skip.

No licence file, so all rights are reserved — read it at the source. We count its rules but don't quote them. Read them on GitHub.

“Common” is measured: kept by at least 6 in 10 of the 10 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

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