One search for your own team's files and the public ecosystem. See how real projects write their agent instructions, and bring the good ideas home.
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
ZanderRussReads credentialsCLAUDE.mdZanderRuss/obsidian-claude/CLAUDE.md
This file provides guidance to Claude Code when working with this Obsidian vault and knowledge management system. "AI amplifies thinking, not just writing." This vault uses Claude as a thinking…
ZanderRussReads credentialsSkillZanderRuss/obsidian-claude/.claude/skills/ai-search/SKILL.md
Model-agnostic AI-powered web search. Use Claude's built-in WebSearch by default, or plug in your own API from OpenAI, Anthropic, Google Gemini, or Perplexity. This skill provides real-time web search with source citations for research, fact-checking, and accessing current information beyond model knowledge cutoffs.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/citation-management/SKILL.md
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/docx/SKILL.md
Comprehensive document creation, editing, and analysis with support for tracked changes, comments, formatting preservation, and text extraction. When Claude needs to work with professional documents (.docx files) for: (1) Creating new documents, (2) Modifying or editing content, (3) Working with tracked changes, (4) Adding comments, or any other document tasks
193 projects use a version of this
Often used withgift-evaluatorVideo Generationfile-reading
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/exploratory-data-analysis/SKILL.md
Perform comprehensive exploratory data analysis on scientific data files across 200+ file formats. This skill should be used when analyzing any scientific data file to understand its structure, content, quality, and characteristics. Automatically detects file type and generates detailed markdown reports with format-specific analysis, quality metrics, and downstream analysis recommendations. Covers chemistry, bioinformatics, microscopy, spectroscopy, proteomics, metabolomics, and general scientific data formats.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/literature-review/SKILL.md
Conduct comprehensive, systematic literature reviews using multiple academic databases (PubMed, arXiv, bioRxiv, Semantic Scholar, etc.). This skill should be used when conducting systematic literature reviews, meta-analyses, research synthesis, or comprehensive literature searches across biomedical, scientific, and technical domains. Creates professionally formatted markdown documents and PDFs with verified citations in multiple citation styles (APA, Nature, Vancouver, etc.).
Often used withpdf-exploreresearch-lookupfigure-style
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/mcp-builder/SKILL.md
Build Model Context Protocol (MCP) servers that enable Claude to interact with external services through well-designed tools. Use this skill when: - Building a new MCP server for Claude Desktop…
Often used withchinese-code-reviewacademy-guidecodebase-migrate
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/obsidian-markdown/SKILL.md
Create and edit Obsidian Flavored Markdown with wikilinks, embeds, callouts, properties, and other Obsidian-specific syntax. Use when working with .md files in Obsidian, or when the user mentions wikilinks, callouts, frontmatter, tags, embeds, or Obsidian notes.
Often used withdefuddleobsidian-clifind-skills
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/pdf-processing-pro/SKILL.md
Production-ready PDF processing with forms, tables, OCR, validation, and batch operations. Use when working with complex PDF workflows in production environments, processing large volumes of PDFs, or requiring robust error handling and validation.
ZanderRussReads credentialsSkillZanderRuss/obsidian-claude/.claude/skills/perplexity-academic/SKILL.md
Academic-focused web search optimized for scholarly research. Pre-configured with academic mode, peer-reviewed source prioritization, and curated academic domains. Use for literature searches, citation verification, and research discovery.
ZanderRussReads credentialsSkillZanderRuss/obsidian-claude/.claude/skills/perplexity-search/SKILL.md
Perform AI-powered web searches with real-time information using Perplexity models. Supports academic mode for scholarly sources, Pro Search for multi-step reasoning, date/domain filtering, file attachments for PDF analysis, and presets for common use cases. Access via direct Perplexity API (preferred) or OpenRouter fallback.
Often used withena-databasegwas-databasebiorxiv-database
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/plotly/SKILL.md
Interactive scientific and statistical data visualization library for Python. Use when creating charts, plots, or visualizations including scatter plots, line charts, bar charts, heatmaps, 3D plots, geographic maps, statistical distributions, financial charts, and dashboards. Supports both quick visualizations (Plotly Express) and fine-grained customization (graph objects). Outputs interactive HTML or static images (PNG, PDF, SVG).
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/scientific-brainstorming/SKILL.md
Research ideation partner. Generate hypotheses, explore interdisciplinary connections, challenge assumptions, develop methodologies, identify research gaps, for creative scientific problem-solving.
Often used withusfiscaldatabenchling-integrationetetoolkit
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/scientific-critical-thinking/SKILL.md
Evaluate research rigor. Assess methodology, experimental design, statistical validity, biases, confounding, evidence quality (GRADE, Cochrane ROB), for critical analysis of scientific claims.
Often used withcommunity-led-growthseo-content-strategistmicro-saas-launcher
ZanderRussReads credentialsSkillZanderRuss/obsidian-claude/.claude/skills/scientific-slides/SKILL.md
Build slide decks and presentations for research talks. Use this for making PowerPoint slides, conference presentations, seminar talks, research presentations, thesis defense slides, or any scientific talk. Provides slide structure, design templates, timing guidance, and visual validation. Works with PowerPoint and LaTeX Beamer.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/scientific-writing/SKILL.md
Core skill for the deep research and writing tool. Write scientific manuscripts in full paragraphs (never bullet points). Use two-stage process: (1) create section outlines with key points using research-lookup, (2) convert to flowing prose. IMRAD structure, citations (APA/AMA/Vancouver), figures/tables, reporting guidelines (CONSORT/STROBE/PRISMA), for research papers and journal submissions.
Often used withusfiscaldataresearch-grantstorch-geometric
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/seaborn/SKILL.md
Statistical visualization. Scatter, box, violin, heatmaps, pair plots, regression, correlation matrices, KDE, faceted plots, for exploratory analysis and publication figures.
Often used withusfiscaldatasimpydeeptools
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/statistical-analysis/SKILL.md
Statistical analysis toolkit. Hypothesis tests (t-test, ANOVA, chi-square), regression, correlation, Bayesian stats, power analysis, assumption checks, APA reporting, for academic research.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/venue-templates/SKILL.md
Access comprehensive LaTeX templates, formatting requirements, and submission guidelines for major scientific publication venues (Nature, Science, PLOS, IEEE, ACM), academic conferences (NeurIPS, ICML, CVPR, CHI), research posters, and grant proposals (NSF, NIH, DOE, DARPA). This skill should be used when preparing manuscripts for journal submission, conference papers, research posters, or grant proposals and need venue-specific formatting requirements and templates.
ZanderRussSkillZanderRuss/obsidian-claude/.claude/skills/xlsx/SKILL.md
Comprehensive spreadsheet creation, editing, and analysis with support for formulas, formatting, data analysis, and visualization. When Claude needs to work with spreadsheets (.xlsx, .xlsm, .csv, .tsv, etc) for: (1) Creating new spreadsheets with formulas and formatting, (2) Reading or analyzing data, (3) Modify existing spreadsheets while preserving formulas, (4) Data analysis and visualization in spreadsheets, or (5) Recalculating formulas
195 projects use a version of this
Often used withVideo Generationgift-evaluatorfile-reading
Plain text files in a repository that tell a coding agent how the project works: commands to run, conventions to follow and things to avoid. CLAUDE.md, AGENTS.md, cursor rules and skills are the common kinds.
CLAUDE.md is read by Claude Code. AGENTS.md is an open format that Codex, Cursor and other agents read. Many projects keep one and point the other at it.
A folder with a SKILL.md that describes one capability, such as filling PDFs or reviewing code. The agent loads it only when the task calls for it.
Your agents already can, over MCP, limited to the files you're allowed to read. Searching them from this page is coming.
