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jonfunk21jonfunk21/co-scientist/pattern-scout/SKILL.md

pattern-scout

Skill4 starsChanged 25 days agoMITView on GitHub

Use only when the user explicitly asks to scout, scan or explore data for patterns: systematic, multiple-testing-aware search returning ranked candidate patterns, not conclusions.

The file

We split this skill into the rules it gives an agent

3 rules. About 0 are common, 1 is distinctive, and 2 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈1

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 2

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Very specific:

    Before showing candidates, check whether the user has recorded their own observations for this data (ledger observations.md).

    line 12
  2. Very specific:

    Write down, and log in the ledger (analyses.md):

    line 16
  3. Distinctive:

    Never phrase candidates as conclusions or mechanisms.

    line 49

≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Pattern scout

Scan data systematically and return candidate patterns the user may find striking. The user judges interest; you report evidence strength. Run only when asked.

1. Protect the user's own view

Before showing candidates, check whether the user has recorded their own observations for this data (ledger observations.md). If not, ask whether they want to note them first, so the scout list does not anchor them. Respect a "just run it".

2. Define the scan before running it

Write down, and log in the ledger (analyses.md):

  • the question or context (from the ledger index)
  • variables and relationships to scan (e.g. all metric pairs, metric vs condition, per-group differences)
  • the number of comparisons this implies
  • thresholds and methods

Defining the space first is what makes the multiple-testing correction honest.

3. Scan

For each candidate:

  • effect size with CI (bootstrap where appropriate)
  • effective n
  • robustness: rank-based version, leave-one-group-out (target, batch, family), outlier removal
  • multiple-testing correction across the whole scan (e.g. Benjamini–Hochberg q-value), or explicit "exploratory, uncorrected"
  • artefact flags: driven by one group or outlier; confounded with batch, length, date; ceiling/floor; trivially explained by construction (e.g. a composite score correlating with its own component)

4. Report candidates

  • Rank by evidence strength (effect size, robustness, corrected significance), not by how interesting you think it is.
  • Show the top 5–10 in a table with caption per reporting-numbers; write the full list to a file and point to it.
  • IDs: S1, S2, … (scout candidates). They are not observations until the user adopts them.
IDPatternEffect [95% CI]nq-valueRobust toArtefact flags

Then one line: total comparisons made, how many survive correction, and what fraction would be expected by chance.

Familiarity flag (see co-scientist) only if a candidate is likely to be called novel and the concept is specifically familiar.

5. Hand over

  • The user picks which candidates are interesting. Adopted ones become observations (O-ids) in the ledger, marked recorded by: scout.
  • Never phrase candidates as conclusions or mechanisms. "X and Y co-vary (ρ = 0.6)", not "X drives Y".
  • Log the scan, including null results and the comparison count, in analyses.md.

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