agentleFS
axiomanticaxiomantic/spellbook/skills/debugging/SKILL.md

debugging

Skill11 starsChanged 3 months agoMITView on GitHub

Use when debugging bugs, test failures, or unexpected behavior. Triggers: 'why isn't this working', 'this doesn't work', 'X is broken', 'something's wrong', 'getting an error', 'exception in', 'stopped working', 'regression', 'crash', 'hang', 'flaky test', 'intermittent failure', or when user pastes a stack trace/error output. NOT for: test quality issues (use fixing-tests), adding new behavior (use develop).

We split this skill into the rules it gives an agent

26 rules. 0 are common, 23 are distinctive, and 3 are very specific to this project.

  • 0

    Common

    Most of the 99 edited versions we read keep these.

  • 23

    Distinctive

    This author's own choices. Worth a look.

  • 3

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Verification Non-Negotiable: No fix is complete without evidence.

    line 18
  2. Very specific:

    Hunches Require Verification: Before claiming "found it" or "root cause," invoke verifying-hunches skill.

    line 21
  3. Distinctive:

    If you find yourself debugging without having completed this phase, STOP IMMEDIATELY and return here.

    line 54
  4. Distinctive:

    Before ANY investigation, establish a known-good reference state.

    line 59
  5. Very specific:

    Do NOT run git stash, git checkout <branch>, git pull, or any other tree-wide operation to establish the baseline.

    line 88
  6. Distinctive:

    Start from CLEAN baseline (from 0.1)

    line 117
  7. Distinctive:

    Run SPECIFIC test/action that should trigger bug

    line 118
  8. Distinctive:

    Before EVERY test, verify:

    line 153
  9. Distinctive:

    If prior attempts = "3+ attempts":

    line 247
  10. Distinctive:

    Wait for explicit choice. If B chosen: reset fix_attempts = 0, proceed.

    line 264
  11. Distinctive:

    Consider refactoring vs. tactical fixes

    line 276
  12. Distinctive:

    Document the pattern issue

    line 277
  13. Very specific:

    Hunch Interception: When you feel like saying "I found it," "this is the issue," or "I think I see what's happening" - STOP.

    line 310
  14. Distinctive:

    Isolated Testing Mandate: Before running ANY experiment or test:

    line 314
  15. Distinctive:

    Test ONE theory at a time

    line 318
  16. Distinctive:

    STOP on reproduction - do not continue investigating

    line 319
  17. Distinctive:

    When user explicitly requests skipping methodology:

    line 346
  18. Distinctive:

    Check cache age: When created? Has lockfile changed since?

    line 392
  19. Distinctive:

    Test cache bypass: Run with cache disabled to isolate

    line 393
  20. Distinctive:

    Invalidation strategy: Document proper invalidation

    line 394
  21. Distinctive:

    No new failures introduced

    line 427
  22. Distinctive:

    Test on unknown code state (always know what you're testing)

    line 448
  23. Distinctive:

    Test multiple theories simultaneously (no isolation)

    line 465
  24. Distinctive:

    Run experiments without designed repro test (action without design)

    line 466
  25. Distinctive:

    If NO to any item, go back and complete it.

    line 495
  26. Distinctive:

    After each debugging session, verify:

    line 498

“Common” is measured: kept by at least 6 in 10 of the 99 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Debugging

<ROLE>Senior Debugging Specialist. Reputation depends on finding root causes, not applying band-aids.</ROLE>

Invariant Principles

  1. Baseline Before Investigation: Establish clean, known-good state BEFORE any debugging. No baseline = no debugging.
  2. Prove Bug Exists First: Reproduce the bug on clean baseline before ANY investigation or fix attempts. No repro = no bug.
  3. Triage Before Methodology: Classify symptom. Simple bugs get direct fixes; complex bugs get structured methodology.
  4. 3-Fix Rule: Three failed attempts require architectural review, not more tactical fixes.
  5. Verification Non-Negotiable: No fix is complete without evidence. Always invoke Phase 4 Verification after claiming resolution.
  6. Track State: Fix attempts AND code state accumulate across methodology invocations. Always know what state you're testing.
  7. Evidence Over Intuition: "I think it's fixed" is not verification.
  8. Hunches Require Verification: Before claiming "found it" or "root cause," invoke verifying-hunches skill. Eureka is hypothesis until tested.
  9. Isolated Testing: One theory, one test, full stop. No mixing theories, no "trying things," no chaos. Invoke isolated-testing skill before ANY experiment execution.

Entry Points

InvocationTriageMethodologyVerification
debuggingYesSelected from triageAuto
debugging --scientificSkipScientificAuto
debugging --systematicSkipSystematicAuto
scientific-debugging skillSkipScientificManual
systematic-debugging skillSkipSystematicManual

Session State

fix_attempts: 0       // Tracks attempts in this session
current_bug: null     // Symptom description
methodology: null     // "scientific" | "systematic" | null
baseline_established: false  // Is clean baseline confirmed?
bug_reproduced: false        // Has bug been reproduced on clean baseline?
code_state: "unknown"        // "clean" | "modified" | "unknown"

Reset on: new bug, explicit request, verified fix.


Phase 0: Prerequisites

<CRITICAL> **THIS PHASE IS MANDATORY.** Cannot proceed to triage or investigation without completing Phase 0.

If you find yourself debugging without having completed this phase, STOP IMMEDIATELY and return here. </CRITICAL>

0.1 Establish Clean Baseline

Before ANY investigation, establish a known-good reference state.

BASELINE CHECKLIST:
[ ] What is the "clean" state? (upstream main, last known working commit, fresh install)
[ ] Can I reach that clean state?
[ ] What does "working correctly" look like on clean state?
[ ] Have I tested clean state to confirm it works?

If working with external code (upstream repo, dependency):

Reach the clean state WITHOUT mutating the current working tree. The checkout may hold uncommitted work you did not author — the operator's, or another agent's — and git stash, git checkout, and git pull all act tree-wide.

git fetch origin                                   # Updates origin/main, no working-tree effect
git worktree add ../baseline-check origin/main     # Clean state, separate directory
# Build/run in ../baseline-check and verify expected behavior works

To compare a single file against its committed content, read it; do not mutate:

git show HEAD:<path>         # Prints committed content, leaves the tree untouched
<CRITICAL> Do NOT run `git stash`, `git checkout <branch>`, `git pull`, or any other tree-wide operation to establish the baseline. If a baseline genuinely requires mutating this working tree, STOP and ask via AskUserQuestion, stating which uncommitted changes are at risk (`git status --porcelain -uall`) and whether they are recoverable. </CRITICAL>

Record the baseline:

BASELINE ESTABLISHED:
- Reference: [commit SHA / version / state description]
- Verified working: [yes/no + what you tested]
- Date: [timestamp]

Set baseline_established = true, code_state = "clean" in session state.

0.2 Prove Bug Exists

<CRITICAL> **HARD GATE: Cannot investigate or fix a bug you haven't reproduced.**

"Someone reported X" is not reproduction. "I think I saw Y" is not reproduction. "The code looks wrong" is not reproduction.

Reproduction means: You personally observed the failure, on a known code state, with a specific test. </CRITICAL>

Reproduction requirements:

  1. Start from CLEAN baseline (from 0.1)
  2. Run SPECIFIC test/action that should trigger bug
  3. Observe ACTUAL failure (error message, wrong output, crash)
  4. Record EXACT steps and output
BUG REPRODUCTION:
- Code state: [clean baseline from 0.1]
- Steps to reproduce:
  1. [exact step]
  2. [exact step]
  3. [exact step]
- Expected: [what should happen]
- Actual: [what actually happened - paste output]
- Reproduced: [YES / NO]

Set bug_reproduced = true in session state on successful reproduction.

If bug does NOT reproduce on clean baseline:

BUG NOT REPRODUCED on clean baseline.

Options:
A) The bug doesn't exist (or is already fixed)
B) Reproduction steps are incomplete
C) Bug is environment-specific

DO NOT proceed to investigation. Either:
- Refine reproduction steps
- Check if bug was already fixed
- Investigate environment differences

0.3 Code State Tracking

Before EVERY test, verify:

CODE STATE CHECK:
- Am I on clean baseline? [yes/no]
- What modifications exist? [list changes]
- Is this the state I INTEND to test? [yes/no]
<FORBIDDEN> - Testing without knowing code state - Making changes and forgetting what you changed - Assuming you're on clean state without verifying - "Let me try this change" without recording it - Running `git stash`, `git checkout <branch>`, or any tree-wide operation to reach a baseline, without explicit user confirmation </FORBIDDEN>

Phase 1: Triage

<analysis> Before debugging, assess: 1. What is the exact symptom? 2. Is it reproducible? 3. What methodology fits this symptom type? </analysis>

1.1 Gather Context

Ask via AskUserQuestion:

AskUserQuestion({
  questions: [
    {
      question: "What's the symptom?",
      header: "Symptom",
      options: [
        { label: "Clear error with stack trace", description: "Error message points to specific location" },
        { label: "Test failure", description: "One or more tests failing" },
        { label: "Unexpected behavior", description: "Code runs but does wrong thing" },
        { label: "Intermittent/flaky", description: "Sometimes works, sometimes doesn't" },
        { label: "CI-only failure", description: "Passes locally, fails in CI" }
      ]
    },
    {
      question: "Can you reproduce it reliably?",
      header: "Reproducibility",
      options: [
        { label: "Yes, every time" },
        { label: "Sometimes" },
        { label: "No, happened once" },
        { label: "Only in CI" }
      ]
    },
    {
      question: "How many fix attempts already made?",
      header: "Prior attempts",
      options: [
        { label: "None yet" },
        { label: "1-2 attempts" },
        { label: "3+ attempts" }
      ]
    }
  ]
})

1.2 Simple Bug Detection

ALL must be true:

  • Clear error with specific location
  • Reproducible every time
  • Zero prior attempts
  • Error directly indicates fix (typo, undefined variable, missing import)

If SIMPLE:

This appears to be a straightforward bug:

[Error]: [specific error message]
[Location]: [file:line]
[Fix]: [obvious fix]

Applying fix directly without methodology.

[Apply fix]
[Proceed to Phase 4 Verification]

Otherwise: Proceed to 1.3

1.3 Check 3-Fix Rule

If prior attempts = "3+ attempts":

<THREE_FIX_RULE_WARNING>

You've attempted 3+ fixes without resolving this issue.
Tactical fixes cannot solve architectural problems.

Options:
A) Stop - conduct architecture review with human
B) Continue (type "I understand the risk, continue")
C) Escalate to human architect
D) Create spike ticket

</THREE_FIX_RULE_WARNING>

Wait for explicit choice. If B chosen: reset fix_attempts = 0, proceed.

Signs of architectural problem (stop and reassess when present):

  • Each fix reveals issues elsewhere
  • "Massive refactoring" required
  • New symptoms appear with each fix
  • Pattern feels fundamentally unsound

Actions when 3-fix rule triggered:

  1. Fractal exploration: Invoke fractal-thinking with intensity explore and seed: "Why does [symptom] persist after [N] fix attempts targeting [root causes]?" Invoke when stuck generating new hypotheses after 2+ disproven theories. Use synthesis to produce new hypothesis families.
  2. Question architecture (not just implementation)
  3. Discuss with human before more fixes
  4. Consider refactoring vs. tactical fixes
  5. Document the pattern issue

Phase 2: Methodology Selection

SymptomReproducibilityRoute To
Intermittent/flakySometimes/NoScientific
Unexpected behaviorSometimes/NoScientific
Clear errorYesSystematic
Test failureYesSystematic
CI-only failurePasses locallyCI Investigation
Any + 3 attemptsAnyArchitecture review

Test failures: Offer fixing-tests skill as alternative (handles test quality, green mirage):

Test failure detected. Options:

A) fixing-tests skill (Recommended for test-specific issues)
   - Handles test quality issues, green mirage detection
B) systematic debugging
   - Better when test reveals production bug

Present recommendation with rationale. Respect user choice; warn if user picks B for a test-quality issue (not a production bug) or A when the test is exposing real production behavior.

Phase 3: Execute Methodology

Invoke selected methodology:

  • /scientific-debugging for hypothesis-driven investigation
  • /systematic-debugging for root cause tracing
<CRITICAL> **Hunch Interception:** When you feel like saying "I found it," "this is the issue," or "I think I see what's happening" - STOP. Invoke `verifying-hunches` skill before claiming discovery. Every eureka is a hypothesis until tested. </CRITICAL><CRITICAL> **Isolated Testing Mandate:** Before running ANY experiment or test: 1. Invoke `isolated-testing` skill 2. Design the complete repro test BEFORE execution 3. Get approval (unless autonomous mode) 4. Test ONE theory at a time 5. STOP on reproduction - do not continue investigating

Chaos indicators (STOP if you catch yourself):

  • "Let me try..." / "Maybe if I..." / "What about..."
  • Making changes without a designed test
  • Testing multiple theories simultaneously
  • Continuing after bug reproduces</CRITICAL>

After Each Fix Attempt

def after_fix_attempt(succeeded: bool):
    fix_attempts += 1

    if succeeded:
        invoke_phase4_verification()
    else:
        if fix_attempts >= 3:
            show_three_fix_warning()
        else:
            print(f"Fix attempt {fix_attempts} failed.")
            print("Returning to investigation with new information...")

If "Just Fix It" Chosen

When user explicitly requests skipping methodology:

Proceeding with direct fix (methodology skipped).

WARNING: Lower success rate and higher rework risk.

[Attempt fix]
[Increment fix_attempts]
[If fails, return to Phase 2 with updated count]

CI Investigation Branch

<RULE>Use when: passes locally, fails in CI; or CI-specific symptoms (cache, env vars, runner limits).</RULE>

CI Symptom Classification

SymptomLikely CausePath
Works locally, fails CIEnvironment parityEnvironment diff
Flaky only in CIResource constraints/timingResource analysis
Cache-related errorsStale/corrupted cacheCache forensics
Permission/access errorsCI secrets/credentialsCredential audit
Timeout failuresRunner limitsPerformance triage
Dependency resolution failsLock file or registryDependency forensics

Environment Diff Protocol

  1. Capture CI environment (from logs or CI config):
    • Runtime versions (Node/Python/etc)
    • OS and architecture
    • Environment variables (redact secrets)
    • Working directory structure
  2. Compare to local:
    | Variable | Local | CI | Impact |
    |----------|-------|----|--------|
  3. Identify parity violations: Version mismatches, missing env vars, path differences

Cache Forensics

  1. Identify cache keys: How is cache keyed? (lockfile hash, branch, manual)
  2. Check cache age: When created? Has lockfile changed since?
  3. Test cache bypass: Run with cache disabled to isolate
  4. Invalidation strategy: Document proper invalidation

Resource Analysis

ConstraintSymptomMitigation
Memory limitOOM killer, exit 137Reduce parallelism, larger runner
CPU throttlingTimeouts, slow testsReduce parallelism, increase timeout
Disk space"No space left"Clean artifacts, smaller images
Network limitsRegistry timeoutsMirrors, retry logic

CI-Specific Checklist

[ ] Reproduced exact CI runtime version locally
[ ] Compared environment variables (CI vs local)
[ ] Tested with cache disabled
[ ] Checked runner resource limits
[ ] Verified secrets/credentials are set
[ ] Confirmed network access (registries, APIs)
[ ] Checked for CI-specific code paths (CI=true, etc.)
[ ] After identifying cause: fix in CI config OR add local reproduction instructions
[ ] Document the environment requirement
[ ] Add CI parity check to README/CLAUDE.md

Phase 4: Verification

<CRITICAL>Auto-invoke Phase 4 Verification after EVERY fix claim. Not optional.</CRITICAL>

Verification confirms:

  • Original symptom no longer occurs
  • Tests pass (if applicable)
  • No new failures introduced

If verification succeeds:

If verification fails:

Verification failed. Bug not resolved.

[Show what failed]

Returning to debugging...

[Increment fix_attempts, check 3-fix rule, continue]

Anti-Patterns

<FORBIDDEN> **Phase 0 violations:** - Skip baseline establishment (no clean reference state) - Investigate without reproducing bug first (prove it exists!) - Test on unknown code state (always know what you're testing) - Forget what modifications you've made - Assume you're on clean state without verifying - Stash or discard uncommitted changes to reach a baseline instead of using a separate worktree

Investigation violations:

  • Skip verification after fix claim
  • Ignore 3-fix warning
  • "Just fix it" for complex bugs without warning
  • Exceed 3 attempts without architectural discussion
  • Apply fix without understanding root cause
  • Claim "it works now" without evidence

Methodology violations:

  • Say "I found it" or "root cause is X" without invoking verifying-hunches
  • Rediscover same theory after it was disproven (check hypothesis registry)
  • "Let me try" / "maybe if I" / "what about" (chaos debugging)
  • Test multiple theories simultaneously (no isolation)
  • Run experiments without designed repro test (action without design)
  • Continue investigating after bug reproduces (stop on reproduction)

Winging it:

  • Debugging without loading this skill
  • Skipping phases because "it's obvious"
  • Making elaborate fixes before proving bug exists</FORBIDDEN>

Self-Check

Before starting investigation:

[ ] Phase 0 completed (baseline + reproduction)
[ ] Clean baseline established and recorded
[ ] Bug reproduced on clean baseline with specific steps
[ ] Code state is known and tracked

Before completing debug session:

[ ] Fix attempts tracked throughout session
[ ] 3-fix rule checked if attempts >= 3
[ ] Phase 4 Verification invoked after fix
[ ] User informed of session outcome
[ ] If methodology skipped, warning was shown
[ ] Code returned to clean state (or changes documented)

If NO to any item, go back and complete it.

<reflection> After each debugging session, verify: - Root cause was identified (not just symptom addressed) - Fix was verified with evidence - 3-fix rule was respected </reflection>

<FINAL_EMPHASIS> Evidence or it didn't happen. Three strikes and you're questioning architecture, not code. Verification is not optional - it's how professionals work. </FINAL_EMPHASIS>

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