hpc
Skill4 starsChanged 42 days agoNo licenceView on GitHub
Use for the Musser Lab's Yale YCRC HPC clusters (McCleary, Bouchet, Misha) when writing SLURM batch scripts, configuring job resources, or for ANY question about cluster storage — quotas, PI/project/scratch/home space, shared data or database folders, Palmer vs Gibbs, /vast vs /gpfs vs /nfs, or purge policy. Also use when running bioinformatics tools on HPC, setting up Snakemake pipelines, managing the cluster software environment (module load vs conda, conda envs, renv on HPC), transferring data to or from the cluster (rsync, scp, Globus, between-cluster transfer), or retrieving YCGA sequencing data (ycgaFastq, URLFetch, archived/Glacier fastq retrieval, the -p ycga partition). Also use when connecting to the cluster remotely or running Claude Code on a compute node (SSH setup, Positron/VS Code Remote SSH, interactive sessions, "Claude Code on the cluster", Duo 2FA + ControlMaster connection multiplexing, Windows/WSL vs macOS/Linux remote setup). Covers lab-specific storage paths, partition tables, and tool resource templates.
- Reads credentials
- Commits and pushes
4 other projects use a version of this.
Adopted by
Most recently taken up by
- k3ybladewielder/skillstheir own version, first seen Sep 20, 2026
- lacerbi/dotclaudetheir own version, first seen Sep 5, 2026
- openmodelingfoundation/skillstheir own version, first seen Aug 1, 2026
- MGIBiominers/claude_skillstheir own version, first seen Jun 19, 2026
Other versions4 projects use a version of this.
Word for word · 0
None found.
Edited · 0
None found.
Wrote their own version · 4
- k3ybladewielder/skills★ 7same name
- openmodelingfoundation/skills★ 5same name
- lacerbi/dotclaude★ 2same name
- MGIBiominers/claude_skills★ 0same name
How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository35 other files it gives its agents.
- AGENTS.mdAGENTS.md
- .claude/CLAUDE.mdCLAUDE.md
- audit-projectSkill
- audit-scriptSkill
- audit-skillsSkill
- cleanup-scriptsSkill
- conda-envSkill
- data-handlingSkill
- debugging-before-patchingSkill
- deep-research-genelistSkill
- deep-research-reportsSkill
- doneSkill
- expression-reportSkill
- feedback-walkthroughSkill
- figure-exportSkill
- file-safetySkill
- gene-lookupSkill
- git-conventionsSkill
- handoffSkill
- learn-codeSkill
- new-planSkill
- new-projectSkill
- new-skillSkill
- pipeline-diagramSkill
- plugin-feedbackSkill
- protein-phylogenySkill
- quarto-book-setupSkill
- quarto-docsSkill
- publishSkill
- r-plotting-styleSkill
- r-renvSkill
- script-organizationSkill
- security-setupSkill
- sync-projectSkill
- tree-formattingSkill
The file
Show its rules and text
We split this skill into the rules it gives an agent
31 rules. 0 are common, 19 are distinctive, and 12 are very specific to this project.
0
Common
Most of the 4 edited versions we read keep these.
19
Distinctive
This author's own choices. Worth a look.
12
Very specific
Tied to their project's names, files or tools. Probably skip.
No licence file, so all rights are reserved — read it at the source. We count its rules but don't quote them. Read them on GitHub.
“Common” is measured: kept by at least 6 in 10 of the 4 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Does it work?
Reviews from people and from AI agents that ran it: what they used it for, and whether it worked.
No reviews yet
People and AI agents can review whether this works in practice. Say what you used it for, and whether it worked.
- It worked
- Partly
- It didn't
Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.