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DanaResearchGroupDanaResearchGroup/agent-skills/paper-outline/SKILL.md

paper-outline

Skill1 starsChanged 3 months agoMITView on GitHub

Plan a scientific paper with the user by filling out the group's Outline document, one decision at a time.

2 other projects use a version of this.

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The file

We split this skill into the rules it gives an agent

6 rules. About 0 are common, 3 are distinctive, and 3 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈3

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 3

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Keep a ledger, visible to the user and updated as you go: one row per objective, carrying the subsection and key figure that earn it and …

    line 18
  2. Distinctive:

    Read what the user hands you at invocation — that input is the brief, and it outranks anything you infer.

    line 34
  3. Very specific:

    When Outline.md or Outline.docx already exists there, load it: this run sharpens that outline rather than opening a blank one.

    line 38
  4. Very specific:

    Run the interview per grilling: one question at a time, AskUserQuestion with your recommendation first, and wait for the answer before the …

    line 48
  5. Distinctive:

    Done when: every ledger row is closed, or parked with the user's explicit say-so.

    line 65
  6. Very specific:

    Write Outline.md in the paper's folder, in the shape bin/render_outline.py documents, then render it:

    line 69

≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Plan a new paper — or sharpen one already underway — by filling out the group's Outline document together with the user.

Two artifacts, side by side in the paper's folder: Outline.md, where the work happens, and Outline.docx, what co-authors read.

The spine: every claim gets earned

A paper is a set of claims. The outline is where each one is earned — backed by a result the work actually produces — and closed — restated as a conclusion.

Keep a ledger, visible to the user and updated as you go: one row per objective, carrying the subsection and key figure that earn it and the conclusion that closes it.

ObjectiveEarned byClosed by
the claim, one sentencesubsection + key figureconclusion

An objective no result reaches is unearned — the work is missing, or the claim is too big for it. A result no objective reaches is orphaned — either it deserves an objective of its own, or it belongs in a different paper. Both are findings; put each to the user rather than quietly balancing the table yourself.

The ledger is what makes this session worth having. Reach it early and keep it on screen.

1. Ground yourself

Read what the user hands you at invocation — that input is the brief, and it outranks anything you infer. Then read the paper's folder: prior drafts, data, figures, the group's related papers.

When Outline.md or Outline.docx already exists there, load it: this run sharpens that outline rather than opening a blank one.

Facts you can find, find. Decisions are the user's.

Done when you can state the scope, the objectives so far, and which results already exist — without having asked the user a single question of fact.

2. Grill

Run the interview per grilling: one question at a time, AskUserQuestion with your recommendation first, and wait for the answer before the next one.

Walk the outline in the order below. Each row names what that section has to settle — arrive with a proposed answer drawn from your legwork, and grill the gap hardest of all, because an intro that misidentifies it costs the whole paper.

SectionWhat to settle
TitleThe claim a reader should carry away.
ScopeOne sentence: what this paper covers, and what it deliberately leaves out.
Paper Objective(s)The claims, as bullets. Each defensible with results in hand or planned.
IntroductionThe funnel — broad, narrowing, state-of-the-art, the gap, then the goal. Name who came closest to the gap and why it is still open.
MethodsEach tool and method, and which objective's evidence it produces.
Results and discussionOne subsection per claim: the key figure, and what it shows that earns the claim.
ConclusionsOne per objective, in the same order — the ledger's closing column.

Done when every ledger row is closed, or parked with the user's explicit say-so.

3. Write and render

Write Outline.md in the paper's folder, in the shape bin/render_outline.py documents, then render it:

python3 bin/render_outline.py <paper-folder>/Outline.md

That fills the group template (assets/Outline-template.docx), so the headings, fonts, and bullets match every other outline the group writes.

Done when both files sit in the paper's folder and Outline.docx carries the group's headings.

4. Hand it back

Show the user the closed ledger and the two paths. Drafting the paper is a separate act — start it only when they ask.

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