aql-authoring
Skill4 starsChanged 8 months agoMITView on GitHub
This skill should be used when the user asks to "write an AQL query", "optimize an AQL query", "review AQL", or "query openEHR data" — the multi-step authoring/optimization workflow for AQL (Archetype Query Language) over openEHR clinical data. For a one-off explanation of an existing query or a single AQL keyword/operator (no authoring), the `/openehr-explain` command suffices.
In this repository10 other files it gives its agents.
- AGENTS.mdAGENTS.md
- .claude/CLAUDE.mdCLAUDE.md
- .github/copilot-instructions.mdCopilot instructions
- archetype-authoringSkill
- archetype-lintSkill
- composition-builderSkill
- demographic-modelingSkill
- openehr-assistantSkill
- semantic-diffSkill
- template-authoringSkill
The file
We split this skill into the rules it gives an agent
12 rules. About 0 are common, 7 are distinctive, and 5 are very specific to this project.
≈0
Common · estimate
Many files like this have a rule of this kind.
≈7
Distinctive · estimate
This author's own choices. Worth a look.
5
Very specific
Tied to their project's names, files or tools. Probably skip.
- Common
- Distinctive
- Very specific
- Distinctive: line 29
Before writing or reviewing any AQL query, load the authoritative guides:
- Very specific: line 51
Use type_specification_get to clarify RM type details when needed
- Distinctive: line 86
When one archetype node repeats as multiple named runtime siblings, add the name to the node predicate (spec-defined shortcuts):
- Very specific: line 99
Always state [LATEST_VERSION] or [ALL_VERSIONS] explicitly — the no-predicate default is not defined by the spec (implementations commonly …
- Very specific: line 105
Use $parameter syntax for reusable queries:
- Very specific: line 147
Use specific archetype node IDs in containment (avoid unqualified CONTAINS OBSERVATION o)
- Very specific: line 148
Avoid SELECT * — select only needed paths
- Distinctive: line 149
Place most selective WHERE conditions first
- Distinctive: line 150
Use parameterized queries for repeated execution
- Distinctive: line 151
Consider index-friendly patterns (ehr_id, composition time, archetype node IDs)
- Distinctive: line 152
Do not assume engine-specific behavior beyond the AQL specification
- Distinctive: line 156
Run through the AQL checklist:
≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Files
AQL Authoring
The inline syntax below is a quick crib. The
aql/syntaxguide loaded in Step 1 is authoritative — if they ever disagree, follow the guide.
Step 1: Load Guides (MANDATORY)
Before writing or reviewing any AQL query, load the authoritative guides:
guide_get("openehr://guides/aql/principles")
guide_get("openehr://guides/aql/syntax")
guide_get("openehr://guides/aql/idioms-cheatsheet")Consult worked examples (when applicable)
When the user asks for a query to adapt, or when the clinical question matches a common pattern (cohort selection, pagination with total count, time-window filtering, cross-composition joins, terminology value-set matching, "latest per EHR", ISM-state filtering), try examples_search(kind="aql") before drafting. The curated AQL examples are under openehr://examples/aql/{name} and include pattern metadata and related-spec links — reuse and adapt rather than invent. Skip this step if the question is clearly novel or the user already provided the skeleton.
Step 2: Understand the Data Model
AQL queries operate on archetypes. Before writing a query:
- State assumptions about deployed templates/archetypes — verify path endpoints and RM types against the deployed template, not display labels; when a deployed template is named, fetch it (
ckm_template_search→ckm_template_get) rather than guessing paths - Identify which archetypes contain the required data (
ckm_archetype_searchwhen the archetype id is not yet known) - Load the archetype to understand its path structure:
ckm_archetype_get("<archetype-id>") - Use
type_specification_getto clarify RM type details when needed
Step 3: AQL Syntax
Basic Structure
SELECT <paths>
FROM EHR e
CONTAINS COMPOSITION c[openEHR-EHR-COMPOSITION.<name>.v1]
CONTAINS OBSERVATION o[openEHR-EHR-OBSERVATION.<name>.v1]
WHERE <conditions>
ORDER BY <paths>Containment
Define the archetype hierarchy using CONTAINS:
FROM EHR e
CONTAINS COMPOSITION c
CONTAINS OBSERVATION o[openEHR-EHR-OBSERVATION.blood_pressure.v2]Path Syntax
Navigate archetype structure using at-codes:
o/data[at0001]/events[at0006]/data[at0003]/items[at0004]/value/magnitudeEHR Predicates
Filter by patient:
FROM EHR e[ehr_id/value = $ehr_id]Node Predicates (sibling disambiguation)
When one archetype node repeats as multiple named runtime siblings, add the name to the node predicate (spec-defined shortcuts):
items[at0001, 'Systolic'] -- name/value shortcut
items[at0001 and name/value='Systolic'] -- explicit form
items[at0001, $nameValue] -- parameterizedVersion-Aware Queries (VERSION in FROM)
FROM EHR e
CONTAINS VERSION v[LATEST_VERSION]
CONTAINS COMPOSITION cAlways state [LATEST_VERSION] or [ALL_VERSIONS] explicitly — the no-predicate default is not defined by the spec (implementations commonly return latest only). Version predicates are grammar-level constructs; consult the aql/syntax guide for semantics, engine caveats, and the common v/… projections.
Operators
MATCHES with a {…} value list is spec-normative — prefer it for code-set filters; IN is not in the spec (engine extension). LIKE patterns must match the entire value. Details and edge cases in the aql/syntax guide.
Parameterized Queries
Use $parameter syntax for reusable queries:
WHERE o/data[at0001]/events[at0006]/time/value > $start_dateStep 4: Common Patterns
Latest Composition by Type
SELECT c
FROM EHR e[ehr_id/value = $ehr_id]
CONTAINS COMPOSITION c[openEHR-EHR-COMPOSITION.encounter.v1]
ORDER BY c/context/start_time/value DESC
LIMIT 1Observations in Date Range
SELECT o/data[at0001]/events[at0006]/data[at0003]/items[at0004]/value/magnitude AS systolic
FROM EHR e[ehr_id/value = $ehr_id]
CONTAINS COMPOSITION c
CONTAINS OBSERVATION o[openEHR-EHR-OBSERVATION.blood_pressure.v2]
WHERE c/context/start_time/value >= $start_date
AND c/context/start_time/value <= $end_dateAggregates
SELECT
COUNT(o) AS count,
AVG(o/data[at0001]/events[at0006]/data[at0003]/items[at0004]/value/magnitude) AS avg_systolic
FROM EHR e
CONTAINS COMPOSITION c
CONTAINS OBSERVATION o[openEHR-EHR-OBSERVATION.blood_pressure.v2]
GROUP BY e/ehr_id/valueFunctions — spec vs engine
Spec-normative aggregates: COUNT, MIN, MAX, SUM, AVG (COUNT/MIN/MAX are the safest across engines). For the spec's single-row function list — and what counts as an engine extension — consult the aql/syntax guide before relying on a function; engine coverage varies.
Step 5: Optimization
- Use specific archetype node IDs in containment (avoid unqualified
CONTAINS OBSERVATION o) - Avoid
SELECT *— select only needed paths - Place most selective WHERE conditions first
- Use parameterized queries for repeated execution
- Consider index-friendly patterns (ehr_id, composition time, archetype node IDs)
- Do not assume engine-specific behavior beyond the AQL specification
Step 6: Review
Run through the AQL checklist:
guide_get("openehr://guides/aql/checklist")Verify:
- Correct containment hierarchy matching the archetype structure
- Valid archetype paths (matching at-codes from the archetype definition)
- Proper use of aliases for readability
- Parameters used for variable values
- Results ordered meaningfully
MATCHES {…}used instead of engine-onlyIN; functions beyond COUNT/MIN/MAX verified against the target engine- VERSION containments (if any) state
[LATEST_VERSION]/[ALL_VERSIONS]explicitly - Query is optimized for the CDR
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