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BioconductorBioconductor/ai-agent-skills/instructions/claude.md

ai-agent-skills / instructions

CLAUDE.md10 starsChanged 3 months agoMITView on GitHub

Add bioconductor skills to your global Claude instructions. Replace /path/to/ai-agent-skills with the actual path (use pwd). Note: If you use this step 2 instead of pasting the skills directly into CLAUDE.md, you will have to give permissions for Claude Code to read a file outside of your project directory when you use it.

The file

We split this claude.md into the rules it gives an agent

2 rules. About 0 are common, 2 are distinctive, and 0 are very specific to this project.

  • ≈0

    Common · estimate

    Many files like this have a rule of this kind.

  • ≈2

    Distinctive · estimate

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Add bioconductor skills to your global Claude instructions.

    line 8
  2. Distinctive:

    Note: If you use this step 2 instead of pasting the skills directly into CLAUDE.md, you will have to give permissions for Claude Code to …

    line 34

≈ “Common” is an estimate: at least 1 in 5 of the 26,980 CLAUDE.md files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
claude.md

Claude Code Setup

Add bioconductor skills to your global Claude instructions.

Setup

  1. Clone the repository (if needed):
    git clone https://github.com/bioconductor/ai-agent-skills.git

  2. Add to ~/.claude/CLAUDE.md:

    # bioconductor AI Agent Skills

See: `/path/to/ai-agent-skills/SKILLS.md`
Behavior Standard: `/path/to/ai-agent-skills/AGENTS.md`

Describe what you need, and I'll match it to the appropriate skill. Always follow the canonical behavior and Git workflow rules defined in AGENTS.md.

 Whenever you read and execute instructions from a Bioconductor SKILL.md file, you MUST include the following citation block at the start or end of your response:
 > 🛠️ **Bioconductor Skill Executed**: <name> | **Version**: <version> | **Author**: <author>

    Replace /path/to/ai-agent-skills with the actual path (use pwd).

  3. Restart Claude Code or reload the workspace.

Note: If you use this step 2 instead of pasting the skills directly into CLAUDE.md, you will have to give permissions for Claude Code to read a file outside of your project directory when you use it.

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Your trail

Files you open will collect here, so you can find them again.

Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.

Now do this for your own.

Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.

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