One search for your own team's files and the public ecosystem. See how real projects write their agent instructions, and bring the good ideas home.
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
garri333Skillgarri333/Skills/skills/10-privalex/privalex-voice-and-tone/SKILL.md
PrivaLex Partners writing voice, tone, and anti-fluff guardrails. Use for ALL content generation to ensure professional, trustworthy, and technically rigorous tone.
garri333Skillgarri333/Skills/skills/10-privalex/seo-guidelines/SKILL.md
SEO optimization guidelines for PrivaLex content. Use when generating blog posts or any web-published content to ensure proper keyword strategy and structure.
garri333Skillgarri333/Skills/skills/10-privalex/target-personas/SKILL.md
Deep profiles of PrivaLex's target personas (CISO, CTO, DPO, Compliance Officer, Startup Founder). Use when tailoring content for specific audiences or with /read-as-* commands.
garri333Reads credentialsSkillgarri333/Skills/skills/11-scientific/adaptyv/SKILL.md
Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.
garri333Skillgarri333/Skills/skills/11-scientific/aeon/SKILL.md
This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.
Often used withusfiscaldata
garri333Skillgarri333/Skills/skills/11-scientific/alphafold-database/SKILL.md
Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.
garri333Skillgarri333/Skills/skills/11-scientific/anndata/SKILL.md
Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.
garri333Skillgarri333/Skills/skills/11-scientific/arboreto/SKILL.md
Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.
Often used withusfiscaldatasimpywhat-if-oracle
garri333Skillgarri333/Skills/skills/11-scientific/astropy/SKILL.md
Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.
garri333Skillgarri333/Skills/skills/11-scientific/benchling-integration/SKILL.md
Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.
Often used withusfiscaldatascikit-biotorch-geometric
garri333Skillgarri333/Skills/skills/11-scientific/biopython/SKILL.md
Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.
Often used withusfiscaldata
garri333Skillgarri333/Skills/skills/11-scientific/biorxiv-database/SKILL.md
Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.
Often used withuspto-databasescikit-biostring-database
garri333Skillgarri333/Skills/skills/11-scientific/bioservices/SKILL.md
Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.
Often used withusfiscaldatadatabase-lookupsimpy
garri333Reads credentialsSkillgarri333/Skills/skills/11-scientific/brenda-database/SKILL.md
Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.
garri333Skillgarri333/Skills/skills/11-scientific/cellxgene-census/SKILL.md
Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.
garri333Skillgarri333/Skills/skills/11-scientific/chembl-database/SKILL.md
Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.
garri333Skillgarri333/Skills/skills/11-scientific/cirq/SKILL.md
Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.
garri333Skillgarri333/Skills/skills/11-scientific/citation-management/SKILL.md
Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.
Often used withvenue-templatesstatistical-analysisscientific-critical-thinking
garri333Skillgarri333/Skills/skills/11-scientific/clinical-decision-support/SKILL.md
Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.
garri333Skillgarri333/Skills/skills/11-scientific/clinical-reports/SKILL.md
Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.
Often used withusfiscaldatasimpytorch-geometric
Plain text files in a repository that tell a coding agent how the project works: commands to run, conventions to follow and things to avoid. CLAUDE.md, AGENTS.md, cursor rules and skills are the common kinds.
CLAUDE.md is read by Claude Code. AGENTS.md is an open format that Codex, Cursor and other agents read. Many projects keep one and point the other at it.
A folder with a SKILL.md that describes one capability, such as filling PDFs or reviewing code. The agent loads it only when the task calls for it.
Your agents already can, over MCP, limited to the files you're allowed to read. Searching them from this page is coming.
