OpenAISkillstring-skill
openai/plugins/plugins/life-science-research/skills/string-skill/SKILL.md
Submit compact STRING API requests for network, interaction partner, and enrichment endpoints. Use when a user wants concise STRING summaries
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OpenAISkillOpenAISkilltpmi-phewas-skill
openai/plugins/plugins/life-science-research/skills/tpmi-phewas-skill/SKILL.md
Fetch compact TPMI PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise TPMI association results for one variant
OpenAISkillukb-topmed-phewas-skill
openai/plugins/plugins/life-science-research/skills/ukb-topmed-phewas-skill/SKILL.md
Fetch compact UKB-TOPMed PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise UKB-TOPMed association results for one variant
OpenAISkilluniprot-skill
openai/plugins/plugins/life-science-research/skills/uniprot-skill/SKILL.md
Submit compact UniProt REST API requests for UniProtKB, UniRef, UniParc, and FASTA stream endpoints. Use when a user wants concise UniProt summaries; save raw JSON or FASTA only on request.
OpenAISkillmagicpath
openai/plugins/plugins/magicpath/skills/magicpath/SKILL.md
Use when the user mentions MagicPath, designs, UI components, themes, canvas selections, or repo-to-canvas UI work; run magicpath-ai to search, inspect, install, or author components.
OpenAISkilldashboard-expert
openai/plugins/plugins/mixpanel-headless/skills/dashboard-expert/SKILL.md
Full CRUD and analysis for Mixpanel dashboards. Use when the user asks to build, create, analyze, read, understand, explain, modify, update, enhance, or manage dashboards, or asks about dashboard layout, text cards, or report arrangement. Covers dashboard analysis (read + understand existing), creation (new builds), modification (update existing), and explanation (data-driven annotation).
OpenAISkillmixpanel-auth
openai/plugins/plugins/mixpanel-headless/skills/mixpanel-auth/SKILL.md
Manage Mixpanel Headless authentication: check session state, list/add/use accounts, run OAuth login, switch projects/workspaces, manage targets, and check bridge credentials.
OpenAISkillmixpanelyst
openai/plugins/plugins/mixpanel-headless/skills/mixpanelyst/SKILL.md
This skill should be used when the user asks about Mixpanel product analytics, event data, funnel analysis, retention curves, cohort analysis, segmentation queries, user behavior, conversion rates, churn, DAU/MAU, ARPU, revenue metrics, feature adoption, A/B test results, user paths, flow analysis, or any request to query, explore, visualize, or analyze Mixpanel data using Python. Also use when the user asks to read, write, or manage Mixpanel "business context" — the markdown documentation that grounds AI assistants in an organization's structure and goals.
OpenAISkillmixpanel-headless-setup
openai/plugins/plugins/mixpanel-headless/skills/setup/SKILL.md
This skill installs mixpanel_headless, pandas, numpy, matplotlib, seaborn, networkx, anytree, scipy (and pyarrow on Python 3.11+), then verifies Mixpanel credentials. It should be invoked when setting up a new environment for Mixpanel data analysis, when dependencies are missing, or when configuring service account or OAuth credentials for the first time.
OpenAISkillngs-amplicon-microbiome
openai/plugins/plugins/ngs-analysis/skills/ngs-amplicon-microbiome/SKILL.md
Kick off public 16S, 18S, ITS, COI, or other marker-gene amplicon microbiome workflows using nf-core/ampliseq, QIIME2, DADA2, and Cutadapt.
OpenAISkillngs-analysis-router
openai/plugins/plugins/ngs-analysis/skills/ngs-analysis-router/SKILL.md
Route BCL, FASTQ, BAM/CRAM, count-matrix, or VCF sequencing requests to the right public NGS analysis skill and ask only the missing assay-specific setup questions.
OpenAISkillngs-atacseq-peaks-qc
openai/plugins/plugins/ngs-analysis/skills/ngs-atacseq-peaks-qc/SKILL.md
Run or plan ATAC-seq QC, alignment, TSS enrichment, fragment-size, blacklist, peak-calling, consensus peak, and differential accessibility workflows.
OpenAISkillngs-bcl-to-fastq
openai/plugins/plugins/ngs-analysis/skills/ngs-bcl-to-fastq/SKILL.md
Validate Illumina BCL run folders and sample sheets, plan demultiplexing, review index/UMI/lane choices, run BCL-to-FASTQ conversion, and interpret demux metrics while surfacing license/download boundaries.
OpenAISkillngs-bulk-rnaseq-counts-qc
openai/plugins/plugins/ngs-analysis/skills/ngs-bulk-rnaseq-counts-qc/SKILL.md
Run or plan bulk RNA-seq FASTQ-to-count processing with sample-sheet, strandedness, genome annotation, alignment or pseudoalignment, MultiQC, and count-matrix QC checks.
OpenAISkillngs-bulk-rnaseq-differential-expression
openai/plugins/plugins/ngs-analysis/skills/ngs-bulk-rnaseq-differential-expression/SKILL.md
Run or plan bulk RNA-seq differential-expression analysis from count matrices with replicate, design formula, contrast, batch, normalization, QC plot, and result-table checks.
OpenAISkillngs-bulk-rnaseq
openai/plugins/plugins/ngs-analysis/skills/ngs-bulk-rnaseq/SKILL.md
Dispatch bulk RNA-seq requests to FASTQ-to-count QC or count-matrix differential-expression skills using nf-core/rnaseq, STAR, Salmon, featureCounts, MultiQC, and R/Bioconductor workflows.
OpenAISkillngs-chip-cutrun-peaks-qc
openai/plugins/plugins/ngs-analysis/skills/ngs-chip-cutrun-peaks-qc/SKILL.md
Run or plan ChIP-seq, CUT&RUN, or CUT&Tag QC, control handling, spike-in, peak calling, broad-vs-narrow target selection, replicate, bigWig, and differential binding workflows.
OpenAISkillngs-dna-germline-variants
openai/plugins/plugins/ngs-analysis/skills/ngs-dna-germline-variants/SKILL.md
Run or plan deep germline WGS, WES, targeted-panel, cohort, or trio variant-calling workflows with reference-build, known-sites, QC, joint-calling, and annotation checks.
OpenAISkillngs-dna-somatic-variants
openai/plugins/plugins/ngs-analysis/skills/ngs-dna-somatic-variants/SKILL.md
Run or plan tumor-normal, tumor-only, WGS, WES, or cancer-panel somatic variant workflows with pairing, contamination, panel-of-normals, purity, QC, and annotation checks.
OpenAISkillngs-dna-umi-panel-variants
openai/plugins/plugins/ngs-analysis/skills/ngs-dna-umi-panel-variants/SKILL.md
Run or plan targeted DNA panel variant workflows that use UMIs, duplex consensus reads, molecular barcodes, low-frequency calling, target coverage, and panel-specific QC.
Agent instruction files
What are agent instruction files?
Plain text files in a repository that tell a coding agent how the project works: commands to run, conventions to follow and things to avoid. CLAUDE.md, AGENTS.md, cursor rules and skills are the common kinds.
CLAUDE.md or AGENTS.md?
CLAUDE.md is read by Claude Code. AGENTS.md is an open format that Codex, Cursor and other agents read. Many projects keep one and point the other at it.
What is a skill?
A folder with a SKILL.md that describes one capability, such as filling PDFs or reviewing code. The agent loads it only when the task calls for it.
Can I search my own team's files too?
Your agents already can, over MCP, limited to the files you're allowed to read. Searching them from this page is coming.