One search for your own team's files and the public ecosystem. See how real projects write their agent instructions, and bring the good ideas home.
OpenAISkillopenai/plugins/plugins/life-science-research/skills/cbioportal-skill/SKILL.md
Submit compact cBioPortal API requests for studies, molecular profiles, mutations, clinical data, and samples. Use when a user wants concise cBioPortal summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/cellxgene-skill/SKILL.md
Submit compact CELLxGENE Discover API requests for public collection and dataset metadata. Use when a user wants concise single-cell collection summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/chebi-skill/SKILL.md
Submit compact ChEBI 2.0 API requests for chemical search, compound lookup, ontology traversal, and structure metadata. Use when a user wants concise ChEBI summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/chembl-skill/SKILL.md
Submit compact ChEMBL API requests for activity, molecule, target, mechanism, and text-search endpoints. Use when a user wants concise ChEMBL summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/civic-skill/SKILL.md
Submit compact CIViC GraphQL requests for cancer variant interpretation schema inspection and targeted evidence retrieval. Use when a user wants concise CIViC summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/clinicaltrials-skill/SKILL.md
Submit compact ClinicalTrials.gov API v2 requests for study search, metadata, enums, search areas, and field statistics. Use when a user wants concise ClinicalTrials.gov summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/clinvar-variation-skill/SKILL.md
Submit compact ClinVar Clinical Tables and NCBI Variation requests for search, VCV, RCV, SCV, and RefSNP lookups. Use when a user wants variant-level summaries or identifier mapping
OpenAISkillopenai/plugins/plugins/life-science-research/skills/efo-ontology-skill/SKILL.md
Submit compact EFO OLS4 requests for search, term lookup, children, and descendants. Use when a user wants concise EFO resolution or ontology-expansion summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/encode-skill/SKILL.md
Submit compact ENCODE REST API requests for object lookups, portal-style search, and metadata retrieval. Use when a user wants concise ENCODE summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/ensembl-skill/SKILL.md
Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Use when a user wants concise Ensembl summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/epigraphdb-skill/SKILL.md
Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Use when a user wants concise EpiGraphDB summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/eqtl-catalogue-skill/SKILL.md
Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Use when a user wants concise public eQTL Catalogue summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/eva-skill/SKILL.md
Submit compact EVA REST requests for species metadata and archived variant lookups. Use when a user wants concise European Variation Archive summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/finngen-phewas-skill/SKILL.md
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant
OpenAISkillopenai/plugins/plugins/life-science-research/skills/genebass-gene-burden-skill/SKILL.md
Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/gnomad-graphql-skill/SKILL.md
Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. Use when a user wants concise gnomAD summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/gtex-eqtl-skill/SKILL.md
Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API. Use when a user wants eQTL associations returned as JSON.
OpenAISkillopenai/plugins/plugins/life-science-research/skills/gwas-catalog-skill/SKILL.md
Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata. Use when a user wants concise GWAS Catalog summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/hmdb-skill/SKILL.md
Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries
OpenAISkillopenai/plugins/plugins/life-science-research/skills/human-protein-atlas-skill/SKILL.md
Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. Use when a user wants concise Human Protein Atlas summaries; save raw JSON or HTML only on request.
Plain text files in a repository that tell a coding agent how the project works: commands to run, conventions to follow and things to avoid. CLAUDE.md, AGENTS.md, cursor rules and skills are the common kinds.
CLAUDE.md is read by Claude Code. AGENTS.md is an open format that Codex, Cursor and other agents read. Many projects keep one and point the other at it.
A folder with a SKILL.md that describes one capability, such as filling PDFs or reviewing code. The agent loads it only when the task calls for it.
Your agents already can, over MCP, limited to the files you're allowed to read. Searching them from this page is coming.
