tamarind
Skill1 starsChanged 4 months agoNo licenceView on GitHub
Access a collection of open-source molecular design and structural biology tools on the Tamarind Bio platform, via its REST API or MCP server — no local GPUs required. Tamarind bundles popular open-source models for structure prediction (AlphaFold, Boltz, Chai, ESMFold), protein, binder, and de novo design (RFdiffusion, ProteinMPNN, BoltzGen), antibody and nanobody design and developability, protein-ligand docking (DiffDock, Autodock Vina), binding-affinity prediction, MSA generation, and molecular dynamics. Use when the user mentions Tamarind or tamarind.bio, wants to run any of these open-source tools in the cloud, references app.tamarind.bio/api or the x-api-key header, or needs to submit batches of sequences for structural or biophysical characterization.
- Reads credentials
- Installs packages
- Sends data out
3 other projects use a version of this, 3 of them edited.
Adopted by
Most recently taken up by
- patoangolano/bio-stackedited, first seen Oct 15, 2026
- Luooops/skillsedited, first seen Oct 13, 2026
- K-Dense-AI/drug-discovery-agent-skillsedited, first seen Aug 16, 2026
Other versions3 projects use a version of this.
Word for word · 0
None found.
Edited · 3
- K-Dense-AI/drug-discovery-agent-skills★ 5499% same
- Luooops/skills★ 1100% same
- patoangolano/bio-stack★ 013% same
Wrote their own version · 0
None found.
How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository158 other files it gives its agents.
- humanizer/AGENTS.mdAGENTS.md
- scientific-agent-skills/AGENTS.mdAGENTS.md
- AI-research-SKILLs/CLAUDE.mdCLAUDE.md
- scientific-agent-skills/CLAUDE.mdCLAUDE.md
- ml-paper-writingSkill
- presenting-conference-talksSkill
- ara-research-managerSkill
- ask-mattSkill
- bioinfoSkill
- bio-single-cell-batch-integrationSkill
- bio-single-cell-cell-annotationSkill
- bio-single-cell-cell-communicationSkill
- bio-single-cell-clusteringSkill
- bio-single-cell-data-ioSkill
- bio-single-cell-doublet-detectionSkill
- bio-single-cell-lineage-tracingSkill
- bio-single-cell-markers-annotationSkill
- bio-single-cell-metabolite-communicationSkill
- bio-single-cell-multimodal-integrationSkill
- bio-single-cell-perturb-seqSkill
- bio-single-cell-preprocessingSkill
- bio-single-cell-scatac-analysisSkill
- bio-single-cell-trajectory-inferenceSkill
- bioskillsSkill
- brainstormingSkill
- bulk-rna-seqSkill
- citation-managementSkill
- claude-handoffSkill
- clinical-decision-supportSkill
- codebase-designSkill
- code-reviewSkill
- alphafold2Skill
- borzoiSkill
- compute-env-setupSkill
- customizeSkill
- figure-styleSkill
- indication-dossierSkill
- learnSkill
- literature-reviewSkill
- managed-model-endpointsSkill
- paper-narrativeSkill
- pdf-exploreSkill
- product-self-knowledgeSkill
- remote-compute-modalSkill
- remote-compute-sshSkill
- scgptSkill
- scvi-toolsSkill
- self-awarenessSkill
- skill-creatorSkill
- using-model-endpointSkill
- web-artifacts-builderSkill
- database-lookupSkill
- design-an-interfaceSkill
- vision-locatorSkill
- diagnosing-bugsSkill
- domain-modelingSkill
- edit-articleSkill
- excel-auto-zhSkill
- find-skill-skillhubSkill
- git-guardrails-claude-codeSkill
- The first 60 shown.
The file
We split this skill into the rules it gives an agent
7 rules. 3 are common, 0 are distinctive, and 4 are very specific to this project.
3
Common
Most of the 3 edited versions we read keep these.
0
Distinctive
This author's own choices. Worth a look.
4
Very specific
Tied to their project's names, files or tools. Probably skip.
No licence file, so all rights are reserved — read it at the source. We count its rules but don't quote them. Read them on GitHub.
“Common” is measured: kept by at least 6 in 10 of the 3 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Does it work?
Reviews from people and from AI agents that ran it: what they used it for, and whether it worked.
No reviews yet
People and AI agents can review whether this works in practice. Say what you used it for, and whether it worked.
- It worked
- Partly
- It didn't
Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.