Claude skills and agent skills

garri333Skill

seo-guidelines

garri333/Skills/skills/10-privalex/seo-guidelines/SKILL.md

SEO optimization guidelines for PrivaLex content. Use when generating blog posts or any web-published content to ensure proper keyword strategy and structure.

garri333Skill

target-personas

garri333/Skills/skills/10-privalex/target-personas/SKILL.md

Deep profiles of PrivaLex's target personas (CISO, CTO, DPO, Compliance Officer, Startup Founder). Use when tailoring content for specific audiences or with /read-as-* commands.

garri333Reads credentialsSkill

adaptyv

garri333/Skills/skills/11-scientific/adaptyv/SKILL.md

Cloud laboratory platform for automated protein testing and validation. Use when designing proteins and needing experimental validation including binding assays, expression testing, thermostability measurements, enzyme activity assays, or protein sequence optimization. Also use for submitting experiments via API, tracking experiment status, downloading results, optimizing protein sequences for better expression using computational tools (NetSolP, SoluProt, SolubleMPNN, ESM), or managing protein design workflows with wet-lab validation.

garri333Skill

aeon

garri333/Skills/skills/11-scientific/aeon/SKILL.md

This skill should be used for time series machine learning tasks including classification, regression, clustering, forecasting, anomaly detection, segmentation, and similarity search. Use when working with temporal data, sequential patterns, or time-indexed observations requiring specialized algorithms beyond standard ML approaches. Particularly suited for univariate and multivariate time series analysis with scikit-learn compatible APIs.

Often used withusfiscaldata

garri333Skill

alphafold-database

garri333/Skills/skills/11-scientific/alphafold-database/SKILL.md

Access AlphaFold 200M+ AI-predicted protein structures. Retrieve structures by UniProt ID, download PDB/mmCIF files, analyze confidence metrics (pLDDT, PAE), for drug discovery and structural biology.

garri333Skill

anndata

garri333/Skills/skills/11-scientific/anndata/SKILL.md

Data structure for annotated matrices in single-cell analysis. Use when working with .h5ad files or integrating with the scverse ecosystem. This is the data format skill—for analysis workflows use scanpy; for probabilistic models use scvi-tools; for population-scale queries use cellxgene-census.

garri333Skill

arboreto

garri333/Skills/skills/11-scientific/arboreto/SKILL.md

Infer gene regulatory networks (GRNs) from gene expression data using scalable algorithms (GRNBoost2, GENIE3). Use when analyzing transcriptomics data (bulk RNA-seq, single-cell RNA-seq) to identify transcription factor-target gene relationships and regulatory interactions. Supports distributed computation for large-scale datasets.

Often used withusfiscaldata·simpy·what-if-oracle

garri333Skill

astropy

garri333/Skills/skills/11-scientific/astropy/SKILL.md

Comprehensive Python library for astronomy and astrophysics. This skill should be used when working with astronomical data including celestial coordinates, physical units, FITS files, cosmological calculations, time systems, tables, world coordinate systems (WCS), and astronomical data analysis. Use when tasks involve coordinate transformations, unit conversions, FITS file manipulation, cosmological distance calculations, time scale conversions, or astronomical data processing.

garri333Skill

benchling-integration

garri333/Skills/skills/11-scientific/benchling-integration/SKILL.md

Benchling R&D platform integration. Access registry (DNA, proteins), inventory, ELN entries, workflows via API, build Benchling Apps, query Data Warehouse, for lab data management automation.

Often used withusfiscaldata·scikit-bio·torch-geometric

garri333Skill

biopython

garri333/Skills/skills/11-scientific/biopython/SKILL.md

Comprehensive molecular biology toolkit. Use for sequence manipulation, file parsing (FASTA/GenBank/PDB), phylogenetics, and programmatic NCBI/PubMed access (Bio.Entrez). Best for batch processing, custom bioinformatics pipelines, BLAST automation. For quick lookups use gget; for multi-service integration use bioservices.

Often used withusfiscaldata

garri333Skill

biorxiv-database

garri333/Skills/skills/11-scientific/biorxiv-database/SKILL.md

Efficient database search tool for bioRxiv preprint server. Use this skill when searching for life sciences preprints by keywords, authors, date ranges, or categories, retrieving paper metadata, downloading PDFs, or conducting literature reviews.

Often used withuspto-database·scikit-bio·string-database

garri333Skill

bioservices

garri333/Skills/skills/11-scientific/bioservices/SKILL.md

Unified Python interface to 40+ bioinformatics services. Use when querying multiple databases (UniProt, KEGG, ChEMBL, Reactome) in a single workflow with consistent API. Best for cross-database analysis, ID mapping across services. For quick single-database lookups use gget; for sequence/file manipulation use biopython.

Often used withusfiscaldata·database-lookup·simpy

garri333Reads credentialsSkill

brenda-database

garri333/Skills/skills/11-scientific/brenda-database/SKILL.md

Access BRENDA enzyme database via SOAP API. Retrieve kinetic parameters (Km, kcat), reaction equations, organism data, and substrate-specific enzyme information for biochemical research and metabolic pathway analysis.

garri333Skill

cellxgene-census

garri333/Skills/skills/11-scientific/cellxgene-census/SKILL.md

Query the CELLxGENE Census (61M+ cells) programmatically. Use when you need expression data across tissues, diseases, or cell types from the largest curated single-cell atlas. Best for population-scale queries, reference atlas comparisons. For analyzing your own data use scanpy or scvi-tools.

garri333Skill

chembl-database

garri333/Skills/skills/11-scientific/chembl-database/SKILL.md

Query ChEMBL bioactive molecules and drug discovery data. Search compounds by structure/properties, retrieve bioactivity data (IC50, Ki), find inhibitors, perform SAR studies, for medicinal chemistry.

garri333Skill

cirq

garri333/Skills/skills/11-scientific/cirq/SKILL.md

Google quantum computing framework. Use when targeting Google Quantum AI hardware, designing noise-aware circuits, or running quantum characterization experiments. Best for Google hardware, noise modeling, and low-level circuit design. For IBM hardware use qiskit; for quantum ML with autodiff use pennylane; for physics simulations use qutip.

garri333Skill

citation-management

garri333/Skills/skills/11-scientific/citation-management/SKILL.md

Comprehensive citation management for academic research. Search Google Scholar and PubMed for papers, extract accurate metadata, validate citations, and generate properly formatted BibTeX entries. This skill should be used when you need to find papers, verify citation information, convert DOIs to BibTeX, or ensure reference accuracy in scientific writing.

Often used withvenue-templates·statistical-analysis·scientific-critical-thinking

garri333Skill

clinical-decision-support

garri333/Skills/skills/11-scientific/clinical-decision-support/SKILL.md

Generate professional clinical decision support (CDS) documents for pharmaceutical and clinical research settings, including patient cohort analyses (biomarker-stratified with outcomes) and treatment recommendation reports (evidence-based guidelines with decision algorithms). Supports GRADE evidence grading, statistical analysis (hazard ratios, survival curves, waterfall plots), biomarker integration, and regulatory compliance. Outputs publication-ready LaTeX/PDF format optimized for drug development, clinical research, and evidence synthesis.

garri333Skill

clinical-reports

garri333/Skills/skills/11-scientific/clinical-reports/SKILL.md

Write comprehensive clinical reports including case reports (CARE guidelines), diagnostic reports (radiology/pathology/lab), clinical trial reports (ICH-E3, SAE, CSR), and patient documentation (SOAP, H&P, discharge summaries). Full support with templates, regulatory compliance (HIPAA, FDA, ICH-GCP), and validation tools.

Often used withusfiscaldata·simpy·torch-geometric

garri333Skill

clinicaltrials-database

garri333/Skills/skills/11-scientific/clinicaltrials-database/SKILL.md

Query ClinicalTrials.gov via API v2. Search trials by condition, drug, location, status, or phase. Retrieve trial details by NCT ID, export data, for clinical research and patient matching.