Query the Reactome database (Analysis and Content Services). Use when the user asks about pathway analysis, gene list enrichment, retrieving results by token, finding unmapped or not-found identifiers, mapping identifiers, reaction participants (inputs, outputs), pathway hierarchy (including top-level pathways), diagram export, cross-reference mapping, or searching the knowledgebase.
10 projects use a version of this
3.4k4mo agoReviewMountCreate a free account to mount
Query the STRING database for protein-protein interactions (PPIs), functional enrichment, and homology. Use when the user asks about interactions between specific proteins, interaction evidence, confidence scores, protein interaction partners, or pathway enrichments.
Fetch Evolutionary Conservation scores (phyloP, phastCons) and Transcription Factor Binding Sites (TFBS) from the UCSC Genome Browser. Use when analyzing whether genomic variants or regions are evolutionarily conserved, functionally important, or bounded by TF regulators across major projects (ENCODE, JASPAR, ReMap).
3.4k4mo agoReviewMountCreate a free account to mount
Queries the UniBind database for experimentally validated transcription factor (TF) binding sites. Use when retrieving direct TF-DNA interaction datasets, downloading binding site coordinates (BED/FASTA) for local analysis, or listing available datasets by species, cell line, or TF name. Don't use to query specific intervals, locations, genes, motif models or expression data.
3.4k4mo agoReviewMountCreate a free account to mount
Access protein metadata, function, taxonomy, and sequences across UniProtKB, UniParc, and UniRef. Use when searching for proteins, mapping identifiers, or retrieving functional annotations and publications. Don't use for sequence alignment, protein folding, or sequence similarity search (use specialized skills for those tasks).
Checks whether the uv Python package manager is installed and installs it if missing. Ensures uv is on PATH. Use when another skill requires uv as a prerequisite.
3.4k4mo agoReviewMountCreate a free account to mount
Distills a completed user workflow or interaction into a reusable agent skill. Use when the user asks to turn their workflow, interaction, or multi-step process into a skill, or when they say "make this a skill", "create a skill from what we just did", "package this workflow" or similar. Do not use for creating skills from scratch without an existing workflow (use a generic skill-creator for that).
3.4k4mo agoReviewMountCreate a free account to mount
Launches, manages, and troubleshoots XManager Cloud (XMC) experiments. A MUST READ before launching any XMC experiment, orchestrating jobs on Kubernetes/GKE, or configuring experiment flags. Don't use for internal corporate launches.
9255mo agoReviewMountCreate a free account to mount
Provides bioacoustic analysis capabilities for ecologists and researchers using the perch-hoplite Python package. A typical use case is to use agile modeling to bootstrap the creation and deployment of a bespoke detector for targeted species on an existing collection of passive acoustic monitoring recordings. Use when processing and annotating audio recordings for bioacoustic applications.
112mo agoReviewMountCreate a free account to mount
Provides capabilities to run SpeciesNet detector and classifier on camera trap images, extract crop-level feature embeddings, and populate a Hoplite vector database for downstream search and agile modeling. Use when ingesting camera trap images, classifying wildlife photos, or indexing camera trap data.
112mo agoReviewMountCreate a free account to mount
Initializes a local uv-managed project directory for agentic ecology workloads. Sets up Python dependencies using reference pyproject.toml and uv.lock, configures workspace rules, and ensures Agentic Ecology skills are discoverable. Use when initializing a new project workspace or bootstrapping a clean environment.
112mo agoReviewMountCreate a free account to mount
Guidelines and templates for creating a generic web UI to visualize, rank, filter, and annotate vector databases. The UI has a hierarchical structure covering database selection, label selection/definition, ranking/filtering configuration, and row visualization/annotation. Use when building, serving, or adapting an interactive web UI for Hoplite vector databases.
112mo agoReviewMountCreate a free account to mount
A folder with a SKILL.md file: a name, a description of when to use it, and instructions. Claude loads a skill only when the task matches its description.
How do I use one I find here?
Copy the folder into your project's .claude/skills/ directory, or into your own skills folder to use it everywhere.
What do the warnings mean?
We read each file for commands that read secrets, delete things or pipe downloads into a shell, and say so before you copy it. No warning is not a promise that a file is safe.
Which skills worked for people?
Open a skill to see its discussion. Reports from people and their agents are coming.
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