ensembl-skill
openai/plugins/plugins/life-science-research/skills/ensembl-skill/SKILL.md
Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Use when a user wants concise Ensembl summaries
Skills real projects publish on GitHub, most starred first. Each one says what it will make an agent do before you copy it.
openai/plugins/plugins/life-science-research/skills/ensembl-skill/SKILL.md
Submit compact Ensembl REST API requests for lookup, overlap, cross-reference, and variation endpoints. Use when a user wants concise Ensembl summaries
openai/plugins/plugins/life-science-research/skills/epigraphdb-skill/SKILL.md
Submit compact EpiGraphDB API requests for ontology, literature, MR, gene-drug, and support-path evidence. Use when a user wants concise EpiGraphDB summaries
openai/plugins/plugins/life-science-research/skills/eqtl-catalogue-skill/SKILL.md
Submit compact eQTL Catalogue API requests for association retrieval and documented metadata endpoints. Use when a user wants concise public eQTL Catalogue summaries
openai/plugins/plugins/life-science-research/skills/eva-skill/SKILL.md
Submit compact EVA REST requests for species metadata and archived variant lookups. Use when a user wants concise European Variation Archive summaries
openai/plugins/plugins/life-science-research/skills/finngen-phewas-skill/SKILL.md
Fetch compact FinnGen PheWAS summaries for single variants by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query. Use when a user wants concise FinnGen association results for one variant
openai/plugins/plugins/life-science-research/skills/genebass-gene-burden-skill/SKILL.md
Submit compact Genebass gene burden requests for one Ensembl gene ID and one burden set. Use when a user wants concise Genebass PheWAS summaries
openai/plugins/plugins/life-science-research/skills/gnomad-graphql-skill/SKILL.md
Submit compact gnomAD GraphQL requests for frequency, gene constraint, and variant context queries. Use when a user wants concise gnomAD summaries
openai/plugins/plugins/life-science-research/skills/gtex-eqtl-skill/SKILL.md
Fetch GTEx single-tissue eQTL associations from one variant input by accepting rsID, GRCh37, or GRCh38 input and resolving to the required GRCh38 query for the GTEx v2 API. Use when a user wants eQTL associations returned as JSON.
openai/plugins/plugins/life-science-research/skills/gwas-catalog-skill/SKILL.md
Submit compact GWAS Catalog REST API v2 requests for studies, associations, SNPs, EFO traits, genes, publications, loci, and metadata. Use when a user wants concise GWAS Catalog summaries
openai/plugins/plugins/life-science-research/skills/hmdb-skill/SKILL.md
Submit compact HMDB search requests for metabolites, proteins, diseases, and pathways. Use when a user wants concise HMDB summaries
openai/plugins/plugins/life-science-research/skills/human-protein-atlas-skill/SKILL.md
Submit compact Human Protein Atlas requests for gene JSON, search downloads, and page-level tissue or cell-line lookups. Use when a user wants concise Human Protein Atlas summaries; save raw JSON or HTML only on request.
openai/plugins/plugins/life-science-research/skills/ipd-skill/SKILL.md
Submit compact IPD REST requests for HLA allele and cell-level metadata using the public IPD query API. Use when a user wants concise IPD summaries; save raw JSON or text only on request.
openai/plugins/plugins/life-science-research/skills/locus-to-gene-mapper-skill/SKILL.md
Map GWAS loci to ranked candidate genes using a deterministic multi-skill chain (EFO -> GWAS -> coordinates -> Open Targets L2G/coloc -> eQTL -> burden/coding context), with reproducible tables and optional figures. Use when a user provides a trait/EFO term and/or lead variants and needs locus-to-gene prioritization for downstream biology decisions.
openai/plugins/plugins/life-science-research/skills/metabolights-skill/SKILL.md
Submit compact MetaboLights requests for study discovery and study-level metabolomics metadata. Use when a user wants concise MetaboLights summaries
openai/plugins/plugins/life-science-research/skills/mgnify-skill/SKILL.md
Submit compact MGnify API requests for microbiome studies, samples, and biome metadata. Use when a user wants concise MGnify summaries
openai/plugins/plugins/life-science-research/skills/ncbi-blast-skill/SKILL.md
Submit, poll, and summarize NCBI BLAST Common URL API jobs (Blast.cgi) for nucleotide or protein sequences. Use when a user wants RID status, BLAST results, or compact top-hit summaries; fetch raw Text/JSON2 only on request.
openai/plugins/plugins/life-science-research/skills/ncbi-clinicaltables-skill/SKILL.md
Submit compact Clinical Tables NCBI Gene requests for human gene lookup, pagination, and field selection. Use when a user wants concise autocomplete-style human gene search results
openai/plugins/plugins/life-science-research/skills/ncbi-datasets-skill/SKILL.md
Submit compact NCBI Datasets v2 requests for assembly, genome, taxonomy, and related metadata endpoints. Use when a user wants concise NCBI Datasets summaries; save raw JSON or text only on request.
openai/plugins/plugins/life-science-research/skills/ncbi-entrez-skill/SKILL.md
Submit compact NCBI Entrez E-Utilities requests for PubMed, Gene, Protein, Nucleotide, PMC metadata, and GEO metadata workflows. Use when a user wants concise Entrez search, fetch, summary, or link results; save raw JSON or XML only on request.
openai/plugins/plugins/life-science-research/skills/ncbi-pmc-skill/SKILL.md
Submit compact NCBI PMC Open Access requests for article/file availability metadata. Use when a user wants concise PMC Open Access summaries; save raw XML only on request.
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