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database-design

Skill1 starsChanged 31 days agoMITView on GitHub

Design SQL schemas, indexes, migrations and data retention for PostgreSQL and SQLite; evaluate integrity, compatibility and query behavior.

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The file

We split this skill into the rules it gives an agent

8 rules. 0 are common, 8 are distinctive, and 0 are very specific to this project.

  • 0

    Common

    Most of the 55 edited versions we read keep these.

  • 8

    Distinctive

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Rule: If multi-tenant or handling financial/PII data → PostgreSQL.

    line 29
  2. Distinctive:

    1NF: No repeating groups, no arrays in columns (use junction tables)

    line 55
  3. Distinctive:

    2NF: Every non-key column depends on the full primary key

    line 56
  4. Distinctive:

    3NF: No transitive dependencies (column A → column B → column C)

    line 57
  5. Distinctive:

    Denormalize intentionally: only for proven performance needs, document why

    line 58
  6. Distinctive:

    Create new table with desired schema

    line 122
  7. Distinctive:

    When reviewing an existing schema:

    line 132
  8. Distinctive:

    tdd: Write schema tests first (can I insert valid data?

    line 157

“Common” is measured: kept by at least 6 in 10 of the 55 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Database Design & Schema Management

When to Use

  • Designing a new database schema or adding tables
  • Reviewing an existing schema for correctness, performance, or security
  • Planning migrations (especially for production data)
  • Designing indexes for query patterns
  • Defining retention/deletion policies for sensitive data
  • Evaluating SQLite vs PostgreSQL for a given use case

SQLite vs PostgreSQL Decision

FactorSQLitePostgreSQL
Single-user/processYesOverkill
Multi-tenantNoYes
Multi-process writesNo (WAL helps reads)Yes
Sensitive data needing RBACNoYes (row-level security)
Schema migrations neededManual/limitedAlembic, full ALTER support
Production deploymentEmbedded onlyAlways appropriate
Full-text searchFTS5 (basic)tsvector/tsquery (rich)
JSON queriesjson_extract (basic)jsonb (rich, indexed)

Rule: If multi-tenant or handling financial/PII data → PostgreSQL. No exceptions.

Schema Design Checklist

1. Table Design

□ Every table has a clear, singular purpose
□ Primary key defined (prefer INTEGER AUTOINCREMENT or UUID, not natural keys)
□ Foreign keys declared with ON DELETE behavior (CASCADE, SET NULL, RESTRICT)
□ NOT NULL on every column that should never be empty
□ DEFAULT values for columns with sensible defaults
□ No VARCHAR without length limit on user-facing input
□ Created_at and updated_at timestamps on every mutable table
□ No redundant data that can be derived from joins

2. Naming Conventions

□ Tables: plural snake_case (users, audit_events, context_chunks)
□ Columns: singular snake_case (user_id, created_at, token_count)
□ Foreign keys: {referenced_table_singular}_id (user_id, blob_hash)
□ Indexes: idx_{table}_{columns} (idx_users_email, idx_chunks_hash_index)
□ Constraints: {type}_{table}_{columns} (uq_aliases_alias_namespace, fk_chunks_hash)

3. Normalization

  • 1NF: No repeating groups, no arrays in columns (use junction tables)
  • 2NF: Every non-key column depends on the full primary key
  • 3NF: No transitive dependencies (column A → column B → column C)
  • Denormalize intentionally only for proven performance needs, document why

4. Index Strategy

□ Primary keys are automatically indexed
□ Foreign keys need explicit indexes (PostgreSQL does NOT auto-index FK columns)
□ Add indexes for WHERE, JOIN, ORDER BY columns in hot queries
□ Composite indexes: leftmost column must be the most selective
□ Covering indexes for read-heavy queries (include all SELECT columns)
□ Partial indexes for queries that filter on a constant (WHERE status = 'active')
□ Do NOT index columns with low cardinality (boolean, enum with 3 values)
□ Do NOT index columns that are rarely queried

5. Multi-Tenant Isolation

□ Tenant ID column on every tenant-scoped table
□ Every query includes WHERE tenant_id = ? (no exceptions)
□ Composite unique constraints include tenant_id: UNIQUE(alias, tenant_id)
□ Row-level security (PostgreSQL) or application-level enforcement
□ Test: Tenant A cannot read Tenant B's data (explicit cross-tenant test)
□ Indexes include tenant_id as prefix for tenant-scoped queries

6. Sensitive Data

□ PII columns identified and documented
□ Encryption-at-rest for SSN, EIN, account numbers (application-level Fernet or PG pgcrypto)
□ No PII in indexes (encrypted columns cannot be indexed — use blind index pattern)
□ Retention policy defined: how long, auto-delete mechanism, audit trail for deletions
□ Audit log table: who accessed what, when, from where (append-only, no DELETE permission)
□ Backup encryption for database dumps containing PII

Migration Strategy

Alembic (Python/SQLAlchemy)

# Initialize
alembic init alembic

# Create migration from model changes
alembic revision --autogenerate -m "add user_roles table"

# Apply
alembic upgrade head

# Rollback
alembic downgrade -1

Migration Safety Rules

□ Never DROP COLUMN in production without a deprecation period
□ Add columns as NULLABLE first, backfill, then add NOT NULL constraint
□ Rename via: add new column → copy data → drop old column (not ALTER RENAME)
□ Large data migrations: batch in chunks (1000-10000 rows) to avoid lock contention
□ Always test migration AND rollback on a copy of production data
□ Migrations must be idempotent (safe to run twice)
□ No data-dependent migrations in the same transaction as schema changes

SQLite Migrations (No Alembic)

SQLite has limited ALTER TABLE support. For schema changes:

  1. Create new table with desired schema
  2. Copy data from old table
  3. Drop old table
  4. Rename new table to old name
  5. Recreate indexes and triggers

Wrap in a transaction. Test on a copy first.

Schema Review Protocol

When reviewing an existing schema:

  1. Read the migration files or CREATE TABLE statements
  2. Map entity relationships — draw the FK graph mentally
  3. Check for missing indexes on FK columns and WHERE clause columns
  4. Check for missing constraints — can invalid data be inserted?
  5. Check tenant isolation — is tenant_id on every tenant-scoped table? In every query?
  6. Check for PII — is sensitive data identified and protected?
  7. Check for orphans — can rows exist without their parent? (missing ON DELETE CASCADE)
  8. Check for N+1 patterns — are related entities fetched in loops instead of JOINs?
  9. Output: findings table with severity (Critical/High/Medium/Low) and recommended fix

Anti-Patterns

Anti-PatternWhy It's BadFix
EAV (Entity-Attribute-Value)Unqueryable, no type safetyProper columns or JSONB
Soft deletes everywhereAccumulates garbage, complicates queriesHard delete + audit log
UUID primary keys on large tables4x storage, worse cache localityBIGINT + UUID as alternate key
Storing JSON blobs for structured dataNo referential integrityNormalize into tables
Missing ON DELETE behaviorOrphaned rowsExplicit CASCADE/RESTRICT
Composite primary keys on 3+ columnsAwkward FK references, join complexitySurrogate key + unique constraint

Integration

  • tdd: Write schema tests first (can I insert valid data? rejected invalid data?)
  • repo-hardening-workflow: Schema review is part of the data governance phase
  • code-quality: N+1 queries and missing indexes are performance findings

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