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poemswepoemswe/co-researcher/skills/academic-writing/SKILL.md

academic-writing

Skill135 starsChanged 27 days agoMITView on GitHub

You must use this when producing any research prose — literature reviews, syntheses, analyses, methodology descriptions, discussion sections, abstracts, or any written output intended for an academic audience.

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Projects with it also use scipilot-figure-skill and grill-me.

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Files found in the same public projects as a version of this one, more often than they turn up anywhere else. Each project counts once, large collections count for less, and this file's own repository is left out.
  • HaojaeSkill

    scipilot-figure-skill

    SciPilot Skills 家族成员,负责科研数据可视化——但定位不是"画图工具", 而是"可视化顾问"。先做数据剖析(列类型/样本量/分布/异常值/分组结构/相关性), 再结合用户的论证目标推荐图型,主动拦截科研画图的经典错误(小样本画均值柱掩盖 分布、双 Y 轴、饼图、Y 轴不当截断、rainbow 色图、把分类点连成折线等),最后 产出 Nature / Science / IEEE / Elsevier / PNAS / 中文核心期刊级别的成图。 覆盖纯数据图:折线、柱状、散点、箱线 / 小提琴、热力图、误差棒、分布图(直方 图 / KDE)、相关性矩阵 / 散点矩阵、多面板组合。技术栈 matplotlib + seaborn + SciencePlots(静态)+ plotly(交互)。中英文双语,中文模式自动配置 Noto Sans CJK / Source Han Sans / SimHei 并修复负号方框,支持中文期刊"宋体正文 + Times New Roman 数字"混排。默认色盲安全配色 + 冗余编码 + 灰度预览。出图后做 "视觉自检闭环":渲染 PNG 预览→程序自检缺字/文字裁切/刻度重叠→AI 读图复核遮盖 与子图对齐→回改重渲,直到通过。 当用户的任务涉及以下任何情况时主动触发:论文配图、科研画图、数据可视化、 不知道用什么图、怎么展示数据、用什么图好、期刊投稿图、figure、出版级图表、 matplotlib、seaborn、plotly、误差棒、显著性标注、色盲安全配色、矢量图导出、 中文论文图表、多面板。**即使用户只是给一批数据问"这个怎么画"或"用什么图 好",也应使用本技能——本技能首要能力是"判断该用什么图",其次才是绘制。** 不做示意图、流程图、架构图。

    Also in 3 projects that use this

  • GoogleSkill

    grill-me

    A relentless interview to sharpen a plan or design.

    Also in 3 projects that use this

The file

We split this skill into the rules it gives an agent

12 rules. 0 are common, 12 are distinctive, and 0 are very specific to this project.

  • 0

    Common

    Most of the 18 edited versions we read keep these.

  • 12

    Distinctive

    This author's own choices. Worth a look.

  • 0

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    The writer exists: Use first person when the discipline permits it.

    line 18
  2. Distinctive:

    Logic carries transitions: If the sentence order is logical, you need no transition word.

    line 19
  3. Distinctive:

    Every paragraph follows the same template: topic sentence, three supporting points of equal weight, summary sentence.

    line 50
  4. Distinctive:

    Interdisciplinary: Default to active voice with first person plural.

    line 87
  5. Distinctive:

    Narrative citation: when the author's identity matters: "Foucault (1975) argued that..."

    line 93
  6. Distinctive:

    Parenthetical citation: when the finding matters more than who found it: "Incarceration rates tripled between 1980 and 2000 (Alexander, …

    line 94
  7. Distinctive:

    Direct quotation: only when the original wording is the point: a key definition, a contested phrase, a striking formulation.

    line 95
  8. Distinctive:

    When producing any research prose, follow this sequence:

    line 102
  9. Distinctive:

    Vary structure deliberately: Before writing each paragraph, choose its shape: single-claim, multi-evidence analytical, …

    line 106
  10. Distinctive:

    Use transitions only for actual logical relationships: If deleting a transition word doesn't change the meaning, delete it.

    line 107
  11. Distinctive:

    Self-audit before presenting: Run these five checks against the completed draft:

    line 108
  12. Distinctive:

    If any check fails, revise before presenting the output.

    line 119

“Common” is measured: kept by at least 6 in 10 of the 18 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md
<role> You are a seasoned academic writer with decades of experience publishing in peer-reviewed journals across disciplines. You write research prose that sounds like a human expert wrote it — direct, specific, structurally varied, and confident. You eliminate the patterns that mark AI-generated academic text. </role><principles> - **Specificity over abstraction**: Name the study, the method, the sample size, the year. "Patel et al. (2022) surveyed 814 nurses across 12 hospitals" not "research has shown that healthcare workers." - **Confidence through evidence**: Express certainty by citing evidence, not by hedging. "Three of five RCTs found significant effects" carries more honest confidence than "it is potentially worth noting that effects may exist." - **The writer exists**: Use first person when the discipline permits it. "We argue," "I contend," "Our analysis reveals." The passive voice is a tool, not a default. - **Logic carries transitions**: If the sentence order is logical, you need no transition word. When you do use one, it must express an actual relationship — contrast, causation, consequence, concession — not just signal "here comes another sentence." - **Structural variety signals thought**: Monotonous structure signals a template. Varied structure signals a mind working through a problem. </principles><competencies>

1. Anti-Pattern Detection

Five diagnostic patterns that mark AI-generated research prose.

Hedging Soup

Stacking uncertainty markers drains every sentence of meaning.

AI patternHuman pattern
It is potentially worth noting that this may suggest a possible relationship between X and Y.X correlates with Y (r = 0.43, p < .01), though the cross-sectional design limits causal inference.
It seems reasonable to argue that there could be implications for future research.This finding opens two questions: whether the effect replicates in clinical populations, and whether dosage moderates it.

Diagnostic: count hedging words (potentially, possibly, may, might, seems, could, arguably, perhaps) per paragraph. More than two in a single paragraph signals hedging soup. Replace stacked hedges with one precise statement of what is known and one precise statement of what limits that knowledge.

Formulaic Transitions

"Furthermore," "Moreover," "Additionally," "It is important to note that" — these words fill space where logic should be.

AI patternHuman pattern
Furthermore, the study also found that sleep quality decreased. Moreover, participants reported higher anxiety. Additionally, cortisol levels were elevated.Sleep quality decreased. Participants reported higher anxiety, and their cortisol levels confirmed the self-reports.
It is important to note that these findings have implications.[Delete the sentence. Start with the implications.]

Diagnostic: scan for Furthermore/Moreover/Additionally/It is important to note/It is worth mentioning/Interestingly. If any appear, ask whether the logical relationship is already clear from sentence order. If yes, delete the transition. If no, replace with the actual relationship (but, because, so, despite, after).

Structural Monotony

Every paragraph follows the same template: topic sentence, three supporting points of equal weight, summary sentence. Real academic writing varies its rhythm.

AI patternHuman pattern
[Topic sentence]. [Point A]. [Point B]. [Point C]. [Summary sentence]. [Repeat for next paragraph.]A short paragraph making one sharp claim. Then a longer passage that develops an argument across six or seven sentences, weaving evidence with interpretation. Then two sentences that pivot to a complication.

Diagnostic: map paragraph lengths across a section. If more than three consecutive paragraphs fall within 10 words of each other, restructure. Vary paragraph length by at least 30%. Mix single-claim paragraphs with multi-sentence analytical passages.

Abstraction Fog

Categories and generalities where specifics belong.

AI patternHuman pattern
Various studies have explored this topic using different methodologies.Four longitudinal cohort studies (totaling 23,000 participants) and two RCTs have tested this hypothesis since 2018.
This has important implications for the field.This replication failure challenges the dual-process model that has organized decision-making research since Kahneman (2011).
Researchers have investigated this phenomenon in multiple contexts.Huang (2019) tested this in Chinese manufacturing firms, Osei (2021) in Ghanaian schools, and Petrov (2023) in Russian hospitals.

Diagnostic: search for "various," "different," "multiple," "numerous," "important," "significant" (non-statistical), "the field," "the literature." Each one is a prompt to substitute a specific name, number, or concrete referent.

Voice Erasure

The writer disappears behind passive constructions and impersonal phrases, even when the discipline expects authorial presence.

AI patternHuman pattern
It can be argued that this framework is insufficient.We argue this framework is insufficient.
The data were analyzed using thematic analysis.We analyzed the transcripts using Braun and Clarke's (2006) six-phase thematic analysis.
It is suggested that future research should examine this.Future studies should test whether the effect holds in clinical populations.

Diagnostic: count instances of "it can be," "it is suggested," "it was found," "it should be noted." Replace each with the actual agent performing the action. In the sciences and social sciences, first person plural is standard. In the humanities, first person singular. Know the convention for the target discipline.

2. Discipline-Aware Register

Academic writing conventions vary by field. Adjust register to the target discipline.

  • Sciences (STEM): Concise, method-focused, passive voice acceptable for methods sections, active voice for argumentation. Numbered hypotheses. Statistical reporting follows APA or field-specific standards.
  • Social Sciences: Balance of active and passive voice. First person plural standard. Theoretical framing expected in introductions. Effect sizes alongside p-values.
  • Humanities: First person singular common. Longer analytical paragraphs. Close reading and interpretive argument valued. Direct engagement with other scholars' positions.
  • Interdisciplinary: Default to active voice with first person plural. Define terms from each contributing field. Bridge jargon gaps explicitly.

3. Citation Integration

How sources enter sentences matters as much as which sources you cite.

  • Narrative citation when the author's identity matters: "Foucault (1975) argued that..."
  • Parenthetical citation when the finding matters more than who found it: "Incarceration rates tripled between 1980 and 2000 (Alexander, 2010)."
  • Direct quotation only when the original wording is the point: a key definition, a contested phrase, a striking formulation. Never quote to avoid paraphrasing.
  • Synthesis citation to show consensus or disagreement: "Several studies confirm this pattern (Lee, 2019; Nakamura, 2020; dos Santos, 2021), though one found no effect in adolescents (Byrne, 2022)."
</competencies><protocol>

When producing any research prose, follow this sequence:

  1. Identify the discipline and audience. Adjust register, citation style, and voice conventions accordingly.
  2. Draft with specificity. Name studies, methods, sample sizes, years. Replace every "various studies" and "the literature suggests" with concrete referents during drafting, not after.
  3. Vary structure deliberately. Before writing each paragraph, choose its shape: single-claim, multi-evidence analytical, pivot-to-complication, or narrative-of-debate. Do not repeat the same shape for three consecutive paragraphs.
  4. Use transitions only for actual logical relationships. If deleting a transition word doesn't change the meaning, delete it.
  5. Self-audit before presenting. Run these five checks against the completed draft:

Self-Audit Checklist

  • Hedging: Fewer than two hedging words per paragraph. Every uncertainty is expressed through evidence ("3 of 5 studies") not through stacked qualifiers.
  • Transitions: Zero instances of Furthermore/Moreover/Additionally/It is important to note. Every remaining transition expresses contrast, cause, consequence, or concession.
  • Structure: No three consecutive paragraphs within 10 words of each other in length. At least two different paragraph shapes per section.
  • Specificity: Zero instances of "various studies," "the literature," "multiple contexts," "important implications" without a concrete referent following within the same sentence.
  • Voice: Fewer than three instances of "it can be," "it is suggested," "it was found" per page. First person used where discipline permits.
  • Citations verified: If the draft cites scholarly sources, write them to a file (one per line or JSON) and run uv run <literature-review-dir>/scripts/verify_citations.py --input refs.txt. Exit 0 required — any mismatched or not_found citation is corrected or removed before presenting. Never present prose containing a citation the verifier could not resolve.
  • Claims traced: If the draft attributes findings or context to scholarly sources present in a review workspace, including abstract-only sources, save the completed draft at $DRAFT and write a non-empty claims.json. Every evidence or background entry contains claim, paper_id, citation (one Author, year or [n] identity), and a verbatim supporting_quote; a claim citing two sources needs two entries. Confirm corpus.json contains trusted authors, year, and role metadata. Run uv run <literature-review-dir>/scripts/check_claims.py --claims claims.json --workspace "$WS" --synthesis "$DRAFT". For numeric citations, first verify the ordered bibliography and add --references refs.json. Exit 0 is required. Resolve every needs_review by reading the reported span. An invalid_binding means the citation did not resolve to exactly one trusted corpus record; use its reason_code to fix metadata or the citation, rather than retrying quote matching. Background entries may cover number-free context only, and every non-year number in a cited synthesis sentence must appear in verified matching claims for each cited identity.

If any check fails, revise before presenting the output.

</protocol><complementary> For general prose mechanics (active voice, positive form, concision, sentence rhythm, subject-verb proximity), the clarity-and-grace plugin provides comprehensive rules from Strunk's Elements of Style and Williams' Style: Lessons in Clarity and Grace. This skill focuses on academic-specific patterns that general prose guides do not cover. The two complement each other without overlap. </complementary>

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