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mcfrankmcfrank/claude-skills/redivis/SKILL.md

redivis

Skill12 starsChanged 19 days agoMITView on GitHub

Practical playbook for any work with Redivis — creating/versioning datasets, tabular and raw-file (index table) uploads, org tokens and scopes, the python/R clients and REST quirks, releases, and linking/referencing datasets correctly. Use whenever a session touches Redivis (uploading data, building or extending a dataset, scripting against the API, debugging auth/upload/version errors, writing docs that link to datasets) and the task is NOT the shiny→datapage site migration — that pattern has its own skill (shiny-to-datapage), which pairs with this one.

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  1. Very specific:

    Every dataset/table has a short reference code (babyview_imu:e7we, recordings:vzmc).

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  2. Very specific:

    Always build permalinks with the reference code, e.g.

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SKILL.md

Redivis playbook

Battle-tested on: wordbank/childes-db/peekbank staging (2026) and the BabyView IMU archive (Aug 2026; reference implementation with all patterns working: ~/Projects/babyview-redivis — manifest → download+scan → stage/verify/release).

Mental model

Dataset → versions (immutable released snapshots + at most one next draft) → tables (tabular, or file index for raw files) → uploads/files. Any data change requires a new version; metadata (description, labels) can be edited on released datasets. Version tags are auto-assigned minor bumps (v1.0, v1.1, …) — you don't choose them, so keep your own source-release↔tag map (JSON in the repo + restate in each version's release notes).

Referencing & links (recurring gotcha)

  • Every dataset/table has a short reference code (babyview_imu:e7we, recordings:vzmc). Name-only references work but break on rename and make the python client print warnings; use the qualified name:code form in code.
  • Dataset links in text/docs: name-based URLs to org datasets don't work. Always build permalinks with the reference code, e.g. https://redivis.com/datasets/datapages.babyview_imu:e7we — not …/datasets/datapages.babyview_imu. Get the code from the API (qualifiedReference) or the dataset page URL.
  • Version-pinned reference: owner.name:code:v1_2 (tags print as v1_4, resolve as "v1.4").

Auth & scopes

  • Token in env REDIVIS_API_TOKEN (keep in a gitignored .secrets, format REDIVIS_API_TOKEN=…). The python client silently prefers env over cached OAuth.
  • Scopes bite in two places: organization.read to list/release org datasets, organization.write to create datasets in an org — a token that lists org datasets fine can still 403 insufficient_scope on create. Personal-workspace token UIs may not offer org scopes; mint from the org.
  • Symptom pattern: 403 with insufficient_scope = wrong token scopes; 400 Cannot modify data on a released version = you targeted a released version instead of the draft (see below).

The draft-targeting rule (python)

Once ANY version is released, the default dataset reference resolves to the released version and rejects writes. All staging operations must target the draft explicitly:

ds = redivis.organization("org").dataset("name:code")
ds.create_next_version(if_not_exists=True)   # no-ops if draft already open
draft = redivis.organization("org").dataset("name:code", version="next")
tb = draft.table("mytable")                  # write via THIS, not ds.table()

This bug is invisible on a brand-new dataset (everything is the draft until the first release) and appears only when staging version 2.

Tabular uploads

  • table.create(upload_merge_strategy="replace") does not take effect — call tb.update(upload_merge_strategy="replace") every run, or a re-release silently DOUBLES the data. Uploads within one version COMBINE.
  • With replace strategy, a table with NO new upload in a version silently keeps the previous version's rows — stage an explicit empty upload if a table should be empty.
  • tb.upload(name).create(path, type="delimited", replace_on_conflict=True, wait_for_finish=True, raise_on_fail=True). Redivis normalizes upload names — compare on alphanumerics when checking "already uploaded".
  • Type inference from CSV is good: ISO dates → date, true/false → boolean (write lowercase), empty strings → NULL. Verify numRows and list_variables() after upload.
  • Big data: compact to few large files first (thousands of small uploads = seconds of API overhead each); parquet needs min_rows_per_group set or you hit the 32,767-row-groups cap ("ordinal 32768 exceeds i16 max").

Raw files (file index tables)

  • table.create(is_file_index=True), then table.add_files(files=[{"path":…, "name":…, "size":…}, …]) (or directory=). Internally parallel (cpu×5) and batched; limits 100M files / 5 TB per file.
  • Index rows: file_id, file_name, size, added_at, md5_hash — md5_hash is base64; convert (base64.b64decode(v).hex()) before comparing to hex md5s (GCS etc.). This enables true end-to-end checksum verification source → local → Redivis.
  • Bulk add_files can die mid-run with 403s on signed temp-upload URLs ("Upload failed after N retries"). Design resumable: list draft index rows, skip present names, chunk uploads (~1000/call), rerun on failure.
  • New versions carry forward existing files; add_files on the draft adds only the new ones.

Reading / REST quirks (python client)

  • Rows endpoint: make_api_request(method="GET", path=f"{table.uri}/rows", query={"maxResults": N}, parse_response=False) returns a requests.Response (use .text), NDJSON lines, typed values.
  • The /rows endpoint 500s on an empty file-index table — check table.get() → numRows first, and only treat empty as empty when numRows==0; never swallow errors into "no files" (causes duplicate re-uploads or vacuous verification).
  • Releases take minutes to propagate for large tables — a read right after release() can 404 at the previous version; retry.
  • Pin versions (dataset(name, version="v1.4")) in anything reproducible.

Release discipline

  • Two-phase always: stage draft → verify draft against a manifest (row counts; for files: name set + sizes + md5s) → release only on PASS. Releases are the near-irreversible step (unrelease() exists for the latest version, but treat it as an escape hatch).
  • ds.release(release_notes=…) — put the source-release name and coverage caveats in the notes.
  • Dataset description is capped at 2,000 chars; longer docs go in the UI Documentation section (no API in the python client) or the repo.
  • Deletion of a whole dataset is possible while private; think before releasing public.

R client / CI (brief — see shiny-to-datapage for depth)

Org-scoped token needed for API releases; LIBARROW_BINARY=true + NOT_CRAN=true on CI or arrow compiles ~2 h; redivis-r isn't on CRAN ( Suggests + r-universe); beware the binary-bake trap (OAuth cache path baked at build time into binaries). Full detail: shiny-to-datapage skill and ~/Projects/shiny-to-observable-advice.md.

Where the R client differs from the python one above (verified Aug 2026, staging the acceleration fit archive):

  • Namespace form: redivis$organization("org")$dataset("name:code"). The older redivis::organization(...) still works but warns.
  • Methods are invisible to names() — that returns fields only, so an object looks empty. The classes are R6 (verified redivis 0.12.12, Sep 2026; the older $methods() recipe errors with "attempt to apply non-function"). Enumerate with names(get("Table", envir = asNamespace("redivis"))$public_methods), and walk parents with $get_inherit() — many methods are inherited: download_files(), list_files() and to_data_frame() live on the parent TabularReader, not on Table. Signatures via formals(gen$public_methods$download_files).
  • Downloading a file-index table: tb$download_files(path = dir) writes every file flat into dir (names only, no subdirectories) — route files afterwards if your code expects a tree. Auth: REDIVIS_API_TOKEN if set (the client warns this is discouraged in interactive sessions), otherwise an OAuth device-login on first use.
  • Draft targeting, R form of the python rule above:
    ds$create_next_version()                       # errors if a draft is open
    draft <- redivis$organization("org")$dataset("name:code", version = "next")
    tb <- draft$table("mytable")                   # write via THIS after v1 exists
  • list_files() returns File refs carrying only kind, id, uri — no name, so it cannot answer "is this file already uploaded". Read the index table itself instead: tb$to_data_frame(max_results = 2e5) gives file_id, file_name, size, added_at, md5_hash. That is also what makes a resumable uploader possible in R.
  • Verify on md5, not row count. A matching numRows only proves the right NUMBER of files arrived. The index md5 is base64; in R, paste(sprintf("%02x", as.integer(openssl::base64_decode(v))), collapse="") converts it for comparison with tools::md5sum().
  • add_files() prints curl noise while succeeding. Broken-pipe and "HTTP2 framing layer" errors scroll past on a slow link and the call still returns normally with every file uploaded. Never read those as failure, and never read their absence as success — verify md5s either way. Chunking (~400 files) plus a retry loop plus the skip-what-is-present check above makes a multi-hundred-MB upload survive a flaky connection.

Trap: re-uploading a table into an existing unreleased version appends

upload_merge_strategy = "replace" only supersedes the previous released version's rows. Two uploads into the same unreleased ("next") version are combined, so re-uploading a corrected table doubles it (wordbank NEXT, 2026-09-15: datasets went 180 → 360). To rebuild a table within a version: for (u in tb$list_uploads()) u$delete() first, then upload. Verify with a SELECT COUNT(*) on `org.dataset:ref:next.table` afterwards — the table page's row count lags. Query references for an unreleased version use the literal next; released ones use the tag with _ (v2_0).

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