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jurgendnjurgendn/agent-skills/skills/research-engineering/research-codebase/SKILL.md

research-codebase

Skill10 starsChanged 56 days agoNo licenceView on GitHub

Set up and maintain a research-experiment harness so experiments run fast and every paper number traces to one command. Use when starting a new project, running a sweep, aggregating runs into a paper table, or cleaning up a codebase that has become hard to navigate. Trigger on "how should I structure my code", "set up my project", "organize my experiments", "starting a new paper", "run all these configurations", "collect my results into a table", "my code is getting messy", "which run produced this number", or "I inherited this codebase". Built for researchers who are strong in the mathematics and weak in software: it fixes a pipeline contract up front so adding an experiment is one line in a list, never an edit to shared code. Not for designing the training loop itself (pytorch-training-recipe / jax-training-recipe), reproducing one paper's method (paper-to-code), choosing which experiment to run or diagnosing overfitting (experiment-design), or auditing a released artifact (reproducibility-audit).

9 other projects use a version of this.

Adopted by

Most recently taken up by

Used with

Projects with it also use validate-plan, iterate-plan and 4 more.

Other files people use alongside this one.

Files found in the same public projects as a version of this one, more often than they turn up anywhere else. Each project counts once, large collections count for less, and this file's own repository is left out.
  • shawn-dumasSkill

    validate-plan

    Validate an orchestration plan after pre-flight certification. Runs adversarial review, deep review (verify prompt data against codebase), and PoC gate for risky approaches. Auto-invoked by orchestrate-* skills at Step 8.

    Also in 4 projects that use this

  • corticalstackSkill

    iterate-plan

    Revise an existing implementation plan in flow/plans/ based on feedback, researching when needed. Explicit-only; run only when invoked via /iterate-plan or explicitly asked.

    Also in 3 projects that use this

  • parcadeiSkill

    describe-pr

    Generate comprehensive PR descriptions following repository templates

    Also in 4 projects that use this

  • JasonPaffSkill

    implement-plan

    Execute implementation plan with structured tracking and validation using subagent architecture

    Also in 4 projects that use this

  • JetBrainsSkill

    create-plan

    Research the codebase and create an implementation plan with architecture notes, design document, and track decomposition. Use when starting a new feature or large change.

    Also in 3 projects that use this

  • SentrySkill

    commit

    Create commit messages following Sentry conventions. Use when committing code changes, writing commit messages, or formatting git history. Follows conventional commits with Sentry-specific issue references.

    Also in 4 projects that use this

The file

We split this skill into the rules it gives an agent

11 rules. 0 are common, 8 are distinctive, and 3 are very specific to this project.

  • 0

    Common

    Most of the 9 edited versions we read keep these.

  • 8

    Distinctive

    This author's own choices. Worth a look.

  • 3

    Very specific

    Tied to their project's names, files or tools. Probably skip.

No licence file, so all rights are reserved — read it at the source. We count its rules but don't quote them. Read them on GitHub.

“Common” is measured: kept by at least 6 in 10 of the 9 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

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