biomcp

genomoncology/biomcp/docs/llms.txt

BioMCP is a biomedical CLI and MCP server for searching biomedical data sources. Install BioMCP: curl -fsSL https://biomcp.org/install.sh | bash Read the installation guide or begin with the documentation. The CLI uses these entity command forms: The current MCP tools are biomcp, search, get, variantnormalizecar, varianterepo, genecspec, and variant_articles. See the CLI reference and MCP server reference. Agents can read any documentation page as Markdown by replacing its trailing slash with .md. Section overview pages use /path/index.md, and the home…

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# BioMCP

BioMCP is a biomedical CLI and MCP server for searching biomedical data sources.

## Get started

Install BioMCP:

    curl -fsSL https://biomcp.org/install.sh | bash

Read the [installation guide](https://biomcp.org/getting-started/installation/) or begin with the [documentation](https://biomcp.org/).

## Interfaces

The CLI uses these entity command forms:

- `search <entity> [filters]`
- `get <entity> <id> [section...]`

The current MCP tools are `biomcp`, `search`, `get`, `variant_normalize_car`, `variant_erepo`, `gene_cspec`, and `variant_articles`. See the [CLI reference](https://biomcp.org/user-guide/cli-reference/) and [MCP server reference](https://biomcp.org/reference/mcp-server/).

## Markdown pages

Agents can read any documentation page as Markdown by replacing its trailing
slash with `.md`. Section overview pages use `/path/index.md`, and the home page
uses `/index.md`. The source is at
https://github.com/genomoncology/biomcp/tree/main/docs.

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