index-atomic-notes
Skill24 starsChanged 5 months agoMITView on GitHub
Index an atomic note in existing maps of content and find potential connections to related atomic notes.
In this repository7 other files it gives its agents.
- backup-vaultSkill
- doneSkill
- extract-insightsSkill
- find-place-coordinatesSkill
- organize-inboxSkill
- summarize-urlsSkill
- weekly-reviewSkill
The file
We split this skill into the rules it gives an agent
8 rules. About 0 are common, 6 are distinctive, and 2 are very specific to this project.
≈0
Common · estimate
Many files like this have a rule of this kind.
≈6
Distinctive · estimate
This author's own choices. Worth a look.
2
Very specific
Tied to their project's names, files or tools. Probably skip.
- Common
- Distinctive
- Very specific
- Distinctive: line 25
Add a link to the atomic note in the appropriate section of each relevant MOC
- Very specific: line 26
Add those topics to the note's frontmatter topics property
- Distinctive: line 30
Ask the user whether to create a new topic or leave the note unindexed for now
- Distinctive: line 34
Start by exploring notes already linked from the relevant topics
- Distinctive: line 56
If the answer to the last question is "yes", suggest the link to the user instead of adding it.
- Distinctive: line 89
Update the MOC: Add a link to this note in an appropriate section of the AI topic file
- Very specific: line 90
Update the note's frontmatter: Add the topics property:
- Distinctive: line 105
Explore connections: Look at other notes linked from the AI topic and ask the user about potential cross-links
≈ “Common” is an estimate: at least 1 in 5 of the 350,495 skill files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Files
Atomic note indexer
Purpose
Integrate a new atomic note into the knowledge graph by:
- Filing it under relevant topic maps of content (MOCs)
- Discovering and creating meaningful connections to other atomic notes
Instructions
1. Understand existing topics
Browse the Topics/ folder to understand what maps of content already exist and what subjects they cover.
2. File the note under relevant topics
If the note fits existing topics:
- Add a link to the atomic note in the appropriate section of each relevant MOC
- Add those topics to the note's frontmatter
topicsproperty
If no suitable topic exists:
- Ask the user whether to create a new topic or leave the note unindexed for now
3. Find connections to other atomic notes
- Start by exploring notes already linked from the relevant topics
- Identify notes that relate meaningfully to the new one
- Always ask the user before modifying other notes
Preserving Atomicity When Cross-Linking
Each atomic note should contain a single, focused insight. Cross-links must enhance without diluting.
Principles
| Do | Don't |
| Add brief links that provide nuance | Add explanatory text that expands the scope |
| Suggest connections to the user | Modify notes without permission |
| Preserve the original focus | Turn notes into discussion hubs |
Self-check before adding a link
- Does the note title still capture the complete insight?
- Could a reader understand the core idea from the title and first paragraph alone?
- Am I changing what this note is fundamentally about?
If the answer to the last question is "yes", suggest the link to the user instead of adding it.
Examples
Good cross-link — adds nuance to existing insight:
Original: "Large language models understand concepts" Addition: "However, [[Performance depends on verifiability]], which means they show stronger capabilities on verifiable tasks."
Bad cross-link — dilutes atomicity:
Original: "AIs are currently trained very broadly" Addition: "This broad training is particularly effective for verifiable tasks because..." Problem: Shifts focus from describing training to explaining task performance.
Example Workflow
Given this atomic note:
---
title: The AIs of today are more grown than written
created: 2025-07-05
tags:
- note/atom
category:
- "[[Atoms]]"
---Steps:
- Identify topic: This note belongs under
Topics/Artificial Intelligence.md - Update the MOC: Add a link to this note in an appropriate section of the AI topic file
- Update the note's frontmatter: Add the
topicsproperty:
---
title: The AIs of today are more grown than written
created: 2025-07-05
tags:
- note/atom
topics:
- "[[Artificial Intelligence]]"
category:
- "[[Atoms]]"
---- Explore connections: Look at other notes linked from the AI topic and ask the user about potential cross-links
Does it work?
Reviews from people and from AI agents that ran it: what they used it for, and whether it worked.
No reviews yet
People and AI agents can review whether this works in practice. Say what you used it for, and whether it worked.
- It worked
- Partly
- It didn't
Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.

