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dragonadamdragonadam/nature-skills/skills/nature-data/SKILL.md

nature-data

Skill4 starsChanged 5 months agoMITView on GitHub

Prepare, audit, or revise Nature-ready Data Availability statements, data repository plans, dataset citations, and FAIR metadata checklists for manuscripts. Use when the user asks about Nature data availability, research data sharing, repository selection, accession numbers, restricted or sensitive data, source data, supplementary datasets, DataCite-style dataset references, FAIR metadata for academic publication, or Chinese-to-English data availability wording for Chinese-speaking authors preparing Nature-family submissions.

We split this skill into the rules it gives an agent

4 rules. 0 are common, 3 are distinctive, and 1 is very specific to this project.

  • 0

    Common

    Most of the 10 edited versions we read keep these.

  • 3

    Distinctive

    This author's own choices. Worth a look.

  • 1

    Very specific

    Tied to their project's names, files or tools. Probably skip.

  • Common
  • Distinctive
  • Very specific
  1. Distinctive:

    Do not try to apply the data-availability logic from memory or from this router.

    line 21
  2. Distinctive:

    Follow these four steps every time the skill is invoked.

    line 25
  3. Very specific:

    Read manifest.yaml. Then read every file listed under always_load:

    line 29
  4. Distinctive:

    Do not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics approvals, access committees, or data-use …

    line 47

“Common” is measured: kept by at least 6 in 10 of the 10 edited versions of this file we could read. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.

Keep what fits and drop the rest. Your version, ready for your agents.
Files
SKILL.md

Nature Data Availability — Router

This skill is split into two layers:

  • A static layer under static/ that holds versioned, reusable content fragments (the default stance and source hierarchy, the Chinese-user operating mode, and the workflow with output format).
  • A dynamic layer (this file plus manifest.yaml) that loads the core every time and reaches for the deeper policy/repository/FAIR references only when a step needs them.

Do not try to apply the data-availability logic from memory or from this router. Always load fragments from disk as described below.

Routing protocol

Follow these four steps every time the skill is invoked.

1. Load the manifest and the core layer

Read manifest.yaml. Then read every file listed under always_load:

  • static/core/stance.md — what the data-availability package is, the default stance, and the source hierarchy.
  • static/core/chinese-mode.md — how to operate when the user writes in Chinese (accept Chinese, draft English, convert terms precisely).
  • static/core/workflow.md — the eight-step workflow and the output format.

2. No content axis — confirm journal and language inline

Unlike nature-writing or nature-figure, nature-data has no fragment axis. Its variation is handled at runtime, not by loading different content bodies:

  • journal/article type — if journal-specific instructions conflict with this skill, follow the journal.
  • access route — each dataset is classified into one route (public repository, controlled access, within paper, reused public, third-party restricted, justified request, or not applicable).
  • user language — if the user writes Chinese, follow core/chinese-mode.md and add the 中文核对 block.

3. Run the workflow

Follow the eight-step workflow in core/workflow.md: identify the journal, inventory every supporting dataset, classify each into one access route, choose repository and identifier strategy before drafting, draft the statement with explicit dataset-to-location mapping, add formal dataset citations, run the FAIR/metadata audit, and return ready-to-paste text plus unresolved fields.

Do not invent DOIs, accession numbers, repository names, licences, embargo dates, ethics approvals, access committees, or data-use conditions. Flag "available upon request" as weak unless there is a specific legal, ethical, commercial, or third-party restriction.

4. Reach for references only when needed

The files under references/ are deep references, not defaults. Open them on demand per the references.on_demand table in the manifest — for example references/policy-principles.md for the governing rules and edge cases, references/repository-and-identifiers.md for repository/accession/DOI choices, references/statement-patterns.md for ready-to-adapt statements, references/fair-metadata-checklist.md for the FAIR audit, references/chinese-author-alignment.md for Chinese wording, and references/source-basis.md to justify a rule with its official source.

Why this split

  • The static layer is versioned and reviewable; the core stays small for a normal statement.
  • The dynamic layer keeps each invocation cheap: the policy, repository, and FAIR depth load only when a step needs them.
  • The router itself is short on purpose. Update fragments and references, not this file, when adding scope.
  • This structure mirrors nature-writing, nature-polishing, nature-reader, nature-paper2ppt, nature-figure, nature-citation, and nature-response.

Download now (ZIP)

  • Other versions10 projects use a version of this.

    Word for word · 0

    None found.

    Wrote their own version · 2

    1. Delagong950/nature-skills★ 4same name
    2. vcis-wangchenxu/agent_nature-skills★ 4same name

    How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.

  • Used alongsideProjects with it also use nature-downloader, nature-experiment-log and 4 more.

    Other files people use alongside this one.

    Files found in the same public projects as a version of this one, more often than they turn up anywhere else. Each project counts once, large collections count for less, and this file's own repository is left out.
    • vcis-wangchenxuSkill

      nature-downloader

      Help legally obtain, organize, and archive academic papers, PDFs, BibTeX, supplementary files, code links, and benchmark documents for RL, MARL, LLM, and LLM Agent research. Do not bypass paywalls or access controls.

      Also in 5 projects that use this

    • Delagong950Skill

      nature-experiment-log

      Standardized lab notebook with structured YAML-frontmatter experiment logs. Supports Obsidian vault integration, image/voice/text input, and batch/tracking systems.

      Also in 5 projects that use this

    • yanjumlinnb-boopSkill

      nature-paper-to-patent

      Convert scientific papers, theses, technical reports, source code, figures, or research manuscripts into evidence-grounded Chinese invention patent drafts. Use when an AI agent must extract patentable technical contributions, map every claimed feature to source evidence, preserve core formulas as editable Office Math, generate claim-aligned flowcharts and methodology figures, compare a paper with an existing patent, audit support and consistency, or deliver separate Chinese DOCX files for claims, specification, abstract, and abstract figure.

      Also in 5 projects that use this

    • Delagong950Skill

      nature-ref-verifier

      Multi-source cross-validation of academic references. Verify authors, title, year, volume, issue, and pages against PubMed, CrossRef, and publisher pages. Detect fabricated citations.

      Also in 4 projects that use this

    • vcis-wangchenxuSkill

      nature-literature-pipeline

      Build a repeatable literature discovery, scoring, reading, and archiving pipeline for RL, MARL, LLM, and LLM Agent research. Use for daily/weekly paper tracking, topic watchlists, benchmark monitoring, and research-note automation.

      Also in 4 projects that use this

    • Yuan1z0825Skill

      nature-shared

      Internal shared-reference support package for installed Nature Skills, including nature-writing, nature-polishing, nature-response, nature-reader, and nature-paper2ppt. Do not invoke it as a standalone user workflow. Load only the specific core or journal-format file requested by another Nature skill.

      Also in 3 projects that use this

  • In this repository9 other files it gives its agents.

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