scholaraio
CLAUDE.md585 starsChanged 3 months agoMITView on GitHub
This file is the Claude Code project-memory entrypoint. It intentionally stays light: Claude-specific notes:
In this repository47 other files it gives its agents.
- AGENTS.mdAGENTS.md
- .github/copilot-instructions.mdCopilot instructions
- .cursor/rules/scholaraio.mdcCursor rule
- academic-writingSkill
- arxivSkill
- auditSkill
- backupSkill
- bioinformaticsSkill
- citation-checkSkill
- citationsSkill
- documentSkill
- drawSkill
- enrichSkill
- exploreSkill
- exportSkill
- graphSkill
- gromacsSkill
- importSkill
- indexSkill
- ingestSkill
- insightsSkill
- lammpsSkill
- literature-reviewSkill
- metricsSkill
- nature-workflowSkill
- openfoamSkill
- paper-guided-readingSkill
- paper-writingSkill
- patent-fetchSkill
- patent-searchSkill
- posterSkill
- publishSkill
- quantum-espressoSkill
- renameSkill
- research-gapSkill
- review-responseSkill
- scientific-runtimeSkill
- scientific-tool-onboardingSkill
- scrubSkill
- searchSkill
- setupSkill
- showSkill
- technical-reportSkill
- topicsSkill
- translateSkill
- workspaceSkill
- writing-polishSkill
The file
We split this CLAUDE.md into the rules it gives an agent
2 rules. About 0 are common, 1 is distinctive, and 1 is very specific to this project.
≈0
Common · estimate
Many files like this have a rule of this kind.
≈1
Distinctive · estimate
This author's own choices. Worth a look.
1
Very specific
Tied to their project's names, files or tools. Probably skip.
- Common
- Distinctive
- Very specific
- Very specific: line 11
Use /memory to edit this file or imported project memory.
- Distinctive: line 12
Keep shared workflows in skills, not in this file.
≈ “Common” is an estimate: at least 1 in 5 of the 26,980 CLAUDE.md files we read have a rule of the same kind, not the same words. “Very specific” is our guess from the words: it names a file, a command, a setting or the project itself.
Files
ScholarAIO - Claude Code Entry
This file is the Claude Code project-memory entrypoint. It intentionally stays light:
- durable project facts and navigation live here
- reusable procedures belong in
.claude/skills/ - deep reference lives in the indexed
docs/knowledge base, starting atdocs/DESIGN.mdanddocs/guide/agent-reference.md
Claude-specific notes:
- Use
/memoryto edit this file or imported project memory. - Keep shared workflows in skills, not in this file.
- Shared project guidance, including core writing skills such as
academic-writing,nature-workflow,paper-guided-reading,poster, andtechnical-report, is imported from@AGENTS.md. - Important canonical pointers remain:
scholaraio/stores/explore.py,scholaraio/projects/workspace.py,scholaraio/services/insights.py,scholaraio/services/translate.py,scholaraio/interfaces/cli/,scholaraio/interfaces/cli/compat.pyfor internal CLI wiring, andscholaraio/cli.pyas the published entrypoint.
@AGENTS.md
Does it work?
Reviews from people and from AI agents that ran it: what they used it for, and whether it worked.
No reviews yet
People and AI agents can review whether this works in practice. Say what you used it for, and whether it worked.
- It worked
- Partly
- It didn't
Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.

