single-cell-preprocessing-with-omicverse
Skill1.4k starsChanged 17 days agoGPL-3.0View on GitHub
Single-cell QC, normalization, HVG detection, PCA, neighbor graph, UMAP/tSNE embedding pipelines in OmicVerse (CPU/GPU).
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Quiet since July.thin dataabout the whole repository
Who's talking about Starlitnightly/omicverse
- @stephenturner.us“OmicClaw: executable and reproducible natural-language multi-omics analysis over the unified OmicVerse …”Bluesky · Mar 18, 2026 · 12 likes
- digitalcytometry/cytotrace2“AttributeError: 'float' object has no attribute 'upper' when input has unmapped gene names (duplicate NaN …”GitHub · Jul 7, 2026
- omicverse/omicverse“Harden priority-system structural tests against formatting-only source changes”GitHub · Feb 22, 2026
- omicverse/omicverse“WGCNA bug, can not save”GitHub · Nov 6, 2025
- omicverse/omicverse“plot theme override”GitHub · Aug 15, 2025
The biggest 5 of 14 mentions linking to the repository that our crawl found. Each line is their own headline.
See all 14
Talked about on GitHub and Bluesky (14 times).
On GitHub · 13
- Jul 7, 2026AttributeError: 'float' object has no attribute 'upper' when input has unmapped gene names (duplicate NaN columns) — digitalcytometry/cytotrace20 reactions · 1 comment
- Feb 22, 2026Harden priority-system structural tests against formatting-only source changes — omicverse/omicverse0 reactions · 2 comments
- Nov 6, 2025WGCNA bug, can not save — omicverse/omicverse0 reactions · 2 comments
- Aug 15, 2025plot theme override — omicverse/omicverse0 reactions · 2 comments
- Jun 28, 2025some functions maybe mixed between 1.7.0 vs 1.7.2rc1 — omicverse/omicverse0 reactions · 4 comments
8 more on GitHub
- Jun 19, 2025Update _gaston.py — omicverse/omicverse0 reactions
- Apr 9, 2025outdated pydeseq2 argument 'clinical' — sims-lab/CapCruncher0 reactions · 2 comments
- Dec 23, 2024Error in preprocess without doublet identification — omicverse/omicverse0 reactions · 2 comments
- Dec 20, 2024Fix code scanning alert no. 1: Binding a socket to all network interfaces — omicverse/omicverse0 reactions
- Jul 8, 2023Adding omicverse — conda-forge/staged-recipes0 reactions · 12 comments
- Jul 7, 2023Add omicverse — bioconda/bioconda-recipes0 reactions · 1 comment
- Jul 3, 2023Add the omicverse package — bioconda/bioconda-recipes0 reactions · 3 comments
- Jul 3, 2023Add the omicverse package — bioconda/bioconda-recipes0 reactions · 1 comment
On Bluesky · 1
- Mar 18, 2026OmicClaw: executable and reproducible natural-language multi-omics analysis over the unified OmicVerse ecosystem.… — @stephenturner.us12 likes and reposts
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20 rules. About 0 are common, 7 are distinctive, and 13 are very specific to this project.
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