bio-applied-cell-type-annotation
Skill6 starsChanged 4 months agoNo licenceView on GitHub
Annotate scRNA-seq Leiden/Louvain clusters into cell types via canonical marker scoring, SingleR reference correlation, and CellTypist logistic-regression classification on an AnnData/SingleCellExperiment object. Use when doing cell type annotation, labeling clusters, scoring marker genes on a UMAP, running SingleR or CellTypist, or resolving ambiguous/NA-labeled clusters in PBMC or other scRNA-seq data.
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