esmfold2
Skill1 starsChanged 40 days agoLicence not identifiedView on GitHub
Biohub ESMFold2 / ESMFold2-Fast all-atom co-folding (Candido et al. 2026, github.com/Biohub/esm). Single-sequence and MSA modes; protein, DNA, RNA, ligand (CCD/SMILES), modified residues. FoldBench Ab-Ag 50-55%, PPI 70-77% DockQ-pass. Also covers the ESMC-{300M,600M,6B} protein language models from the same release: masked-LM logits, hidden states, mutation scoring, contact prediction, and the SAE interpretability head. MIT-licensed weights on HuggingFace org `biohub`. Use this skill when: (1) Predicting complex structures with single-sequence input, (2) Validating designed binders with ESMFold2-Fast, (3) Running ESMFold2 with MSA input, (4) Getting ESMC embeddings or per-residue mutation scores, (5) Choosing kernel backend and sampling-step settings for paper-faithful throughput.
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2 other projects use a version of this.
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- HughYau/AcademicForgeword for word, first seen Nov 8, 2026
- JimLiu/science-skillsword for word, first seen Jul 1, 2026
Other versions2 projects use a version of this.
Word for word · 2
- HughYau/AcademicForge★ 2.6k100% same
- JimLiu/science-skills★ 228100% same
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How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository28 other files it gives its agents.
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- diffdockSkill
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- ligandmpnnSkill
- literature-reviewSkill
- managed-model-endpointsSkill
- openfold3Skill
- paper-narrativeSkill
- pdf-exploreSkill
- product-self-knowledgeSkill
- proteinmpnnSkill
- remote-compute-modalSkill
- remote-compute-sshSkill
- scgptSkill
- scvi-toolsSkill
- self-awarenessSkill
- skill-creatorSkill
- solublempnnSkill
- using-model-endpointSkill
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