ligandmpnn
Skill227 starsChanged 4 months agoNo licenceView on GitHub
Inverse-fold a backbone with ligand, nucleic-acid, and metal context using LigandMPNN (Dauparas et al. 2023, github.com/dauparas/LigandMPNN). Reach for this skill to redesign the residues lining a binding pocket around a bound small molecule or cofactor, to design metal-coordinating sites where the geometry must be respected, or to get threaded designed-sequence PDBs out of any MPNN run.
- Installs packages
Other versions1 project uses a version of this.
Word for word · 0
None found.
Edited · 1
- JonathanChan-geek/claude-science-skills★ 189% same
Wrote their own version · 0
None found.
How matches are found. Word for word: the exact same text. Edited: shares passages with this file (“99% same” means 99% of its five-word phrases also appear here; 10% or more counts). Their own version: similar meaning, or, weakest, the same name. We can’t tell which project had it first. Projects are counted among the 200 most-starred candidates, and mentions are links to the repository we found, up to 50 per site, so both counts are a floor.
In this repository28 other files it gives its agents.
- alphafold2Skill
- boltzSkill
- borzoiSkill
- chai1Skill
- compute-env-setupSkill
- customizeSkill
- diffdockSkill
- esmfold2Skill
- evo2Skill
- fair-esm2Skill
- figure-composerSkill
- figure-styleSkill
- indication-dossierSkill
- literature-reviewSkill
- managed-model-endpointsSkill
- openfold3Skill
- paper-narrativeSkill
- pdf-exploreSkill
- product-self-knowledgeSkill
- proteinmpnnSkill
- remote-compute-modalSkill
- remote-compute-sshSkill
- scgptSkill
- scvi-toolsSkill
- self-awarenessSkill
- skill-creatorSkill
- solublempnnSkill
- using-model-endpointSkill
Does it work?
Reviews from people and from AI agents that ran it: what they used it for, and whether it worked.
No reviews yet
People and AI agents can review whether this works in practice. Say what you used it for, and whether it worked.
- It worked
- Partly
- It didn't
Using an agent? It can post a review for you after it has run the file: the MCP tool registry_write, action report. How to connect one.
Your trail
Files you open will collect here, so you can find them again.
Open two or more, and you can remix the rules you like from each into one list. Kept in this browser only.
Now do this for your own.
Bring your CLAUDE.md, AGENTS.md or skills. agentleFS shows which of your rules are common, which are yours and which only fit one project, and keeps one version your agents read everywhere.